BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0152000 Os06g0152000|J090065M08
(115 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0152000 Conserved hypothetical protein 160 3e-40
Os01g0739200 Dual specificity protein phosphatase domain co... 117 2e-27
Os05g0524200 Dual specificity protein phosphatase domain co... 114 1e-26
Os10g0561900 Dual specificity protein phosphatase domain co... 98 1e-21
>Os06g0152000 Conserved hypothetical protein
Length = 115
Score = 160 bits (404), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/115 (69%), Positives = 80/115 (69%)
Query: 1 LQGREKGESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFYPTLLYNVVRSKVQ 60
LQGREKGES LFYPTLLYNVVRSKVQ
Sbjct: 1 LQGREKGESAMAVVEAAGGRRGVAAGERRKAKAKEAAVGAMARALFYPTLLYNVVRSKVQ 60
Query: 61 AEFRWWDEVDQFILLGAVPFRRDVPRLQKLGVYGVITLNEPFETLVPSSMYQASC 115
AEFRWWDEVDQFILLGAVPFRRDVPRLQKLGVYGVITLNEPFETLVPSSMYQASC
Sbjct: 61 AEFRWWDEVDQFILLGAVPFRRDVPRLQKLGVYGVITLNEPFETLVPSSMYQASC 115
>Os01g0739200 Dual specificity protein phosphatase domain containing protein
Length = 341
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 63/69 (91%)
Query: 45 LFYPTLLYNVVRSKVQAEFRWWDEVDQFILLGAVPFRRDVPRLQKLGVYGVITLNEPFET 104
LFYPTLLYNV+R++ +AEFRWWD VDQ+ILLGAVPF DVPRL++LGV GV+TLNE +ET
Sbjct: 52 LFYPTLLYNVLRNRFEAEFRWWDRVDQYILLGAVPFPSDVPRLKQLGVQGVVTLNEAYET 111
Query: 105 LVPSSMYQA 113
LVP+S+YQA
Sbjct: 112 LVPTSLYQA 120
>Os05g0524200 Dual specificity protein phosphatase domain containing protein
Length = 377
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 62/69 (89%)
Query: 45 LFYPTLLYNVVRSKVQAEFRWWDEVDQFILLGAVPFRRDVPRLQKLGVYGVITLNEPFET 104
LFYPTLLYNV+R++ ++EFRWWD +DQ++LLGAVPF DVP L++LGV GV+TLNE +ET
Sbjct: 56 LFYPTLLYNVLRNRFESEFRWWDRIDQYVLLGAVPFSSDVPHLKQLGVRGVVTLNESYET 115
Query: 105 LVPSSMYQA 113
LVP+S+YQA
Sbjct: 116 LVPTSLYQA 124
>Os10g0561900 Dual specificity protein phosphatase domain containing protein
Length = 362
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 56/69 (81%)
Query: 45 LFYPTLLYNVVRSKVQAEFRWWDEVDQFILLGAVPFRRDVPRLQKLGVYGVITLNEPFET 104
LFYPTL+YNVVR++ + F WWD+VD+ +LLGAVPF DV RL++LGV GV+TLNE +E
Sbjct: 66 LFYPTLVYNVVRNRFEPHFHWWDQVDEHVLLGAVPFPSDVLRLKELGVCGVVTLNESYER 125
Query: 105 LVPSSMYQA 113
LVP +Y+A
Sbjct: 126 LVPRCLYEA 134
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.141 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,482,508
Number of extensions: 67593
Number of successful extensions: 83
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 4
Length of query: 115
Length of database: 17,035,801
Length adjustment: 82
Effective length of query: 33
Effective length of database: 12,754,253
Effective search space: 420890349
Effective search space used: 420890349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)