BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0141200 Os06g0141200|AK061234
         (145 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0141200  Similar to RNA-binding protein EWS                  301   2e-82
Os02g0203700  Similar to Testis expressed sequence 13A protein    152   7e-38
Os01g0555100  Similar to TATA-binding protein associated fac...   122   1e-28

>Os06g0141200 Similar to RNA-binding protein EWS
          Length = 145

 Score =  301 bits (770), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MNIQRKPGDWNCKSCQHLNFSRRDYCQRCHTPRQDLPLGDGYVPGGVLTSLDIRPGDWYC 60
           MNIQRKPGDWNCKSCQHLNFSRRDYCQRCHTPRQDLPLGDGYVPGGVLTSLDIRPGDWYC
Sbjct: 1   MNIQRKPGDWNCKSCQHLNFSRRDYCQRCHTPRQDLPLGDGYVPGGVLTSLDIRPGDWYC 60

Query: 61  NCGYHNFASRASCFKCGAIVKDLPAGQGGGVANGDFARALDSSAVRAGWKAGDWICTRPG 120
           NCGYHNFASRASCFKCGAIVKDLPAGQGGGVANGDFARALDSSAVRAGWKAGDWICTRPG
Sbjct: 61  NCGYHNFASRASCFKCGAIVKDLPAGQGGGVANGDFARALDSSAVRAGWKAGDWICTRPG 120

Query: 121 CNVHNFASRIECYRCNAPREAGNVK 145
           CNVHNFASRIECYRCNAPREAGNVK
Sbjct: 121 CNVHNFASRIECYRCNAPREAGNVK 145



>Os02g0203700 Similar to Testis expressed sequence 13A protein
          Length = 166

 Score =  152 bits (385), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 90/163 (55%), Positives = 105/163 (64%), Gaps = 23/163 (14%)

Query: 3   IQRKPGDWNCKSCQHLNFSRRDYCQRCHTPRQDLPLGDG--------------YVPGGVL 48
           + RKPGDW+C++CQHLNFSRRD CQRC  PR     G G                 GG  
Sbjct: 1   MNRKPGDWDCRACQHLNFSRRDLCQRCGEPRGAADRGSGGGGDYANFGGRGGSSFGGGFG 60

Query: 49  TSLDIRPGDWYCNCGYHNFASRASCFKCGAIVKD--LPAGQGGGVANGDFARA----LDS 102
           T  D+RPGDWYCNCG HNFASR+SCFKC A   D  + +G  G    GD +R+      S
Sbjct: 61  TGSDVRPGDWYCNCGAHNFASRSSCFKCAAFKDDAAVNSGGAGAFDGGDMSRSRGYGFGS 120

Query: 103 SAVRA---GWKAGDWICTRPGCNVHNFASRIECYRCNAPREAG 142
            AVRA   GWK+GDWICTR GCN HNFASR+EC+RCNAPR++G
Sbjct: 121 GAVRASRPGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDSG 163



>Os01g0555100 Similar to TATA-binding protein associated factor 2N (RNA-binding
           protein 56) (TAFII68) (TAF(II)68)
          Length = 139

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 84/139 (60%), Gaps = 16/139 (11%)

Query: 4   QRKPGDWNCKSCQHLNFSRRDYCQRCHTPRQDLPLGDGYVPGGVLTSLDIRPGDWYCNC- 62
            RKPGDW+C+SCQ++NF +R+ CQRC   +  +   D    GG     +++PGDW C C 
Sbjct: 10  MRKPGDWSCRSCQYVNFCKREACQRCGEAKLGVERTDYAAMGG---GWEVKPGDWCCRCC 66

Query: 63  GYHNFASRASCFKCGAIVKDLPAG--QGGGVANGDFARALDSSAVRAGWKAGDWICTRPG 120
             +N+ASR SCFKCGA   D  A   QG G           S A +AGWK GDWIC R  
Sbjct: 67  AVNNYASRGSCFKCGAAKNDSAAAVAQGWGF----------SVASQAGWKNGDWICPRME 116

Query: 121 CNVHNFASRIECYRCNAPR 139
           CNV N+A+R EC+RCN PR
Sbjct: 117 CNVQNYANRTECFRCNFPR 135



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.140    0.499 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,374,110
Number of extensions: 292367
Number of successful extensions: 712
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 3
Length of query: 145
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 54
Effective length of database: 12,284,327
Effective search space: 663353658
Effective search space used: 663353658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 151 (62.8 bits)