Os02g0203700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Testis expressed sequence 13A protein.
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Os02g0203700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Testis expressed sequence 13A protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.14 | 0.463 | 11.5 | -0.445 | 1.14 | -0.452 | 1.74 | -4.47 | 0.458 | 17.1 | 19.87 | 773 | -- | -- |
| 106.21 | 0.484 | 11.4 | 0.575 | 1.35 | -1.04 | 2.12 | -- | 0.788 | 15.8 | 19.87 | 773 | -- | -- |
| 101.29 | 0.469 | 11.5 | -0.44 | 1.07 | -0.516 | -- | -4.31 | 0.463 | 17.3 | 18.7 | 955 | -- | -- |
| 111.54 | 0.492 | 11.4 | 0.576 | 1.1 | -0.765 | -- | -- | 0.68 | 17.4 | 25.35 | 991 | -- | -- |
| 155.18 | 0.58 | 11.5 | -0.49 | -- | -0.508 | -- | -4.06 | 0.441 | -- | 22.83 | 1180 | -- | -- |
| 122.75 | 0.519 | 11.4 | 0.371 | 1.02 | -- | 1.68 | -- | 0.613 | 16.3 | -- | -- | -- | -- |
| 128.92 | 0.532 | 11.4 | 0.385 | 1.06 | -- | -- | -- | 0.622 | 16.9 | -- | -- | -- | -- |
| 162.74 | 0.594 | 11.4 | 0.625 | -- | -0.789 | -- | -- | 0.661 | -- | 24.5 | 1234 | -- | -- |
| 120.09 | 0.51 | 11.4 | -- | 1.07 | -0.645 | -- | -- | 0.607 | 17.4 | 25.4 | 1014 | -- | -- |
| 188.19 | 0.641 | 11.4 | 0.346 | -- | -- | -- | -- | 0.595 | -- | -- | -- | -- | -- |
| 132.82 | 0.539 | 11.4 | -- | 1.05 | -- | -- | -- | 0.579 | 16.9 | -- | -- | -- | -- |
| 171.78 | 0.61 | 11.4 | -- | -- | -0.709 | -- | -- | 0.628 | -- | 24.54 | 1228 | -- | -- |
| 191.34 | 0.646 | 11.4 | -- | -- | -- | -- | -- | 0.556 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 17 |
| 6 | 91.25 | temperature | 10 | 720 | > th | dose dependent | sin | 22 | NA |
| 81 | 92.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 9 |
| 233 | 94.71 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 22 |
| 241 | 94.79 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 15 |
| 242 | 94.79 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 20 |
| 260 | 94.94 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 17 |
| 298 | 95.25 | temperature | 30 | 720 | < th | dose independent | sin | 2 | NA |
| 314 | 95.42 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 23 |
| 331 | 95.54 | temperature | 10 | 10 | > th | dose dependent | sin | 16 | NA |
| 346 | 95.64 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 9 |
| 368 | 95.80 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 23 |
| 380 | 95.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 17 |
| 394 | 95.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 401 | 96.04 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 23 |
| 410 | 96.10 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 23 |
| 450 | 96.34 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 496 | 96.70 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 11 |
| 546 | 97.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 596 | 97.27 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 647 | 97.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 691 | 97.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 10 |
| 708 | 98.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 8 |
| 779 | 98.56 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 11 |
| 780 | 98.56 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 13 |
| 852 | 98.89 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 8 |
| 855 | 98.91 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 16 |
| 967 | 99.24 | temperature | 30 | 720 | < th | dose independent | sin | 22 | NA |