BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0203700 Os02g0203700|AK072940
(166 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15680.1 | chr3:5315437-5316048 FORWARD LENGTH=165 144 3e-35
AT5G25490.1 | chr5:8876639-8877339 FORWARD LENGTH=171 135 8e-33
AT2G26695.1 | chr2:11365275-11365789 FORWARD LENGTH=139 108 2e-24
AT2G17975.1 | chr2:7822238-7823970 REVERSE LENGTH=269 70 6e-13
>AT3G15680.1 | chr3:5315437-5316048 FORWARD LENGTH=165
Length = 164
Score = 144 bits (362), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/165 (53%), Positives = 96/165 (58%), Gaps = 17/165 (10%)
Query: 4 KPGDWDCRACQHLNFSRRDLCQRCGEPXXXXXXXXXXXXXYANXXXXXXXXXXXXXXXXX 63
+PGDW+CR+C HLNF RRD CQRCG+ + N
Sbjct: 3 RPGDWNCRSCSHLNFQRRDSCQRCGD--SRSGPGGVGGLDFGNFGGRAMSAFGFTTGS-- 58
Query: 64 DVRPGDWYC---NCGAHNFASRSSCFKCAAFKDDAAVNSGGAG----AFDGGDMSRSRGY 116
DVRPGDWYC NCG HNFASRS+CFKC FKD+ GG G A D+ RSR
Sbjct: 59 DVRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVP 118
Query: 117 GFGSGAVRASRPGWKSGDWICTRSGCNEHNFASRMECFRCNAPRD 161
G G R WKSGDWICTR GCNEHNFASRMECFRCNAPRD
Sbjct: 119 GNGG------RSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRD 157
>AT5G25490.1 | chr5:8876639-8877339 FORWARD LENGTH=171
Length = 170
Score = 135 bits (341), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 94/173 (54%), Gaps = 14/173 (8%)
Query: 1 MNRKPGDWDCRACQHLNFSRRDLCQRCGEPXXXXXXXXXXXXXYANXXXXXXXXXXXXXX 60
MNR PGDW+CR C HLNF RRD CQRC EP +
Sbjct: 1 MNR-PGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTD-----LLSGFGGRPVSSSFGFN 54
Query: 61 XXXDVRPGDWYCN---CGAHNFASRSSCFKCAAFKDD-----AAVNSGGAGAFDGGDMSR 112
DVRPGDWYCN CG HNFA+RSSCFKC A KD+ AA +G G
Sbjct: 55 TGPDVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGL 114
Query: 113 SRGYGFGSGAVRASRPGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDSGTE 165
G SG R WKSGDWIC RSGCNEHNFASR ECFRCNAP++ TE
Sbjct: 115 FGFGGSSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKELATE 167
>AT2G26695.1 | chr2:11365275-11365789 FORWARD LENGTH=139
Length = 138
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 80/166 (48%), Gaps = 33/166 (19%)
Query: 1 MNRKPGDWDCRACQHLNFSRRDLCQRCGEPXXXXXXXXXXXXXYANXXXXXXXXXXXXXX 60
M+ GDW C ACQH NF +R+ CQ+CG P
Sbjct: 1 MSWTGGDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYN----------------- 43
Query: 61 XXXDVRPGDWYC---NCGAHNFASRSSCFKCAAFKDDAAVNSGGAGAFDGGDMSRSRGYG 117
+V GDWYC NCG+HN+ASR+SC++C K + GA G+
Sbjct: 44 -RTEVMAGDWYCGALNCGSHNYASRTSCYRCGMIKVEYTEQYYGAQMVAYGN-------- 94
Query: 118 FGSGAVRASRPGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDSG 163
GA A PGWK+GDW+C R GC HN+ASR ECF+C RD G
Sbjct: 95 --DGA--ACPPGWKTGDWVCPRVGCGVHNYASRAECFKCKTTRDYG 136
>AT2G17975.1 | chr2:7822238-7823970 REVERSE LENGTH=269
Length = 268
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 46/182 (25%)
Query: 4 KPGDWDCRACQHLNFSRRDLCQRCGEPXXXXXXXXXXXXXYANXXXXXXXXXXXXXXXXX 63
+ GDW+C C++ N++ R C RC +P +
Sbjct: 5 REGDWECLGCRNRNYAFRSFCNRCKQPRLIMDNNTSPNSKWL------------------ 46
Query: 64 DVRPGDWYCN-CGAHNFASRSSCFKCAAFKDDAAVNSGGAGAFDGGDMSRSRGYGFGSGA 122
R GDW C C +N+ASR C KC K+ AA++ A A G + Y F G
Sbjct: 47 -PRIGDWICTGCTNNNYASREKCKKCGQSKEVAALS---ALAIPGASLQTHLHY-FTRGP 101
Query: 123 VRASRPG-----------------WKSGDWICTRSGCNEHNFASRMECFRCN--APRDSG 163
+PG W+SGDWIC C HN++SR++C +CN AP G
Sbjct: 102 ESHDQPGSLLAFSNATNQASVHKEWRSGDWICR---CGFHNYSSRIQCKKCNEIAPLALG 158
Query: 164 TE 165
T+
Sbjct: 159 TK 160
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 70/209 (33%), Gaps = 55/209 (26%)
Query: 6 GDWDCRACQHLNFSRRDLCQRCGEPXXXXXXXXXXXXXYANXXXXXX------------- 52
GDW C C + N++ R+ C++CG+ +
Sbjct: 50 GDWICTGCTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGS 109
Query: 53 ----XXXXXXXXXXXDVRPGDWYCNCGAHNFASRSSCFKC-----AAFKDDAAVNSGGAG 103
+ R GDW C CG HN++SR C KC A + A
Sbjct: 110 LLAFSNATNQASVHKEWRSGDWICRCGFHNYSSRIQCKKCNEIAPLALGTKRLASEALAH 169
Query: 104 AFDGGDMSRSRGYGFGSGAVRASRPG-------------------------------WKS 132
+D +++ A+ AS PG W+
Sbjct: 170 EWDSKRLNQGYTSMQTQSAIYASFPGMSLGRVSNWQLPLPFLQQHSTPALLGMGVKQWRD 229
Query: 133 GDWICTRSGCNEHNFASRMECFRCNAPRD 161
GDW+CT C HN+ASR EC RC RD
Sbjct: 230 GDWMCT--NCKNHNYASRAECNRCKTTRD 256
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.488
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,397,014
Number of extensions: 121348
Number of successful extensions: 752
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 734
Number of HSP's successfully gapped: 13
Length of query: 166
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 75
Effective length of database: 8,611,713
Effective search space: 645878475
Effective search space used: 645878475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)