BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0203700 Os02g0203700|AK072940
         (166 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0203700  Similar to Testis expressed sequence 13A protein    242   1e-64
Os06g0141200  Similar to RNA-binding protein EWS                  156   7e-39
Os01g0555100  Similar to TATA-binding protein associated fac...   112   1e-25

>Os02g0203700 Similar to Testis expressed sequence 13A protein
          Length = 166

 Score =  242 bits (617), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 136/166 (81%)

Query: 1   MNRKPGDWDCRACQHLNFSRRDLCQRCGEPXXXXXXXXXXXXXYANXXXXXXXXXXXXXX 60
           MNRKPGDWDCRACQHLNFSRRDLCQRCGEP             YAN              
Sbjct: 1   MNRKPGDWDCRACQHLNFSRRDLCQRCGEPRGAADRGSGGGGDYANFGGRGGSSFGGGFG 60

Query: 61  XXXDVRPGDWYCNCGAHNFASRSSCFKCAAFKDDAAVNSGGAGAFDGGDMSRSRGYGFGS 120
              DVRPGDWYCNCGAHNFASRSSCFKCAAFKDDAAVNSGGAGAFDGGDMSRSRGYGFGS
Sbjct: 61  TGSDVRPGDWYCNCGAHNFASRSSCFKCAAFKDDAAVNSGGAGAFDGGDMSRSRGYGFGS 120

Query: 121 GAVRASRPGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDSGTEV 166
           GAVRASRPGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDSGTEV
Sbjct: 121 GAVRASRPGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDSGTEV 166



>Os06g0141200 Similar to RNA-binding protein EWS
          Length = 145

 Score =  156 bits (394), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 85/163 (52%), Positives = 98/163 (60%), Gaps = 23/163 (14%)

Query: 1   MNRKPGDWDCRACQHLNFSRRDLCQRCGEPXXXXXXXXXXXXXYANXXXXXXXXXXXXXX 60
           + RKPGDW+C++CQHLNFSRRD CQRC  P                              
Sbjct: 3   IQRKPGDWNCKSCQHLNFSRRDYCQRCHTPR--------------QDLPLGDGYVPGGVL 48

Query: 61  XXXDVRPGDWYCNCGAHNFASRSSCFKCAAFKDDAAVNSGGAGAFDGGDMSRSRGYGFGS 120
              D+RPGDWYCNCG HNFASR+SCFKC A   D     GG  A   GD +R+      S
Sbjct: 49  TSLDIRPGDWYCNCGYHNFASRASCFKCGAIVKDLPAGQGGGVA--NGDFARA----LDS 102

Query: 121 GAVRASRPGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDSG 163
            AVRA   GWK+GDWICTR GCN HNFASR+EC+RCNAPR++G
Sbjct: 103 SAVRA---GWKAGDWICTRPGCNVHNFASRIECYRCNAPREAG 142



>Os01g0555100 Similar to TATA-binding protein associated factor 2N (RNA-binding
           protein 56) (TAFII68) (TAF(II)68)
          Length = 139

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 87/159 (54%), Gaps = 35/159 (22%)

Query: 3   RKPGDWDCRACQHLNFSRRDLCQRCGEPXXXXXXXXXXXXXYANXXXXXXXXXXXXXXXX 62
           RKPGDW CR+CQ++NF +R+ CQRCGE              YA                 
Sbjct: 11  RKPGDWSCRSCQYVNFCKREACQRCGEAKLGVERTD-----YA------------AMGGG 53

Query: 63  XDVRPGDWYCNC-GAHNFASRSSCFKCAAFKDDAAVNSGGAGAFDGGDMSRSRGYGFGSG 121
            +V+PGDW C C   +N+ASR SCFKC A K+D+A              + ++G+GF   
Sbjct: 54  WEVKPGDWCCRCCAVNNYASRGSCFKCGAAKNDSAA-------------AVAQGWGFSV- 99

Query: 122 AVRASRPGWKSGDWICTRSGCNEHNFASRMECFRCNAPR 160
              AS+ GWK+GDWIC R  CN  N+A+R ECFRCN PR
Sbjct: 100 ---ASQAGWKNGDWICPRMECNVQNYANRTECFRCNFPR 135



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.488 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,925,618
Number of extensions: 243198
Number of successful extensions: 1887
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1876
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 73
Effective length of database: 12,179,899
Effective search space: 889132627
Effective search space used: 889132627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)