Os06g0141200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA-binding protein EWS.
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Os06g0141200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA-binding protein EWS.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 973.27 | 1.47 | 12.3 | -4.13 | 2.9 | 2.99 | 1.71 | -0.485 | -1.47 | 9.23 | 10.49 | 1441 | 7.06 | -- |
| 973.58 | 1.45 | 12.3 | -4.04 | 2.9 | 2.98 | 1.74 | -- | -1.47 | 9.24 | 10.5 | 1440 | 7.16 | -- |
| 983.55 | 1.46 | 12.3 | -4.09 | 2.9 | 2.96 | -- | -0.594 | -1.48 | 9.19 | 10.49 | 1442 | 7.02 | -- |
| 984.03 | 1.46 | 12.3 | -3.97 | 2.9 | 2.94 | -- | -- | -1.44 | 9.21 | 10.49 | 1442 | 7.11 | -- |
| 1466.53 | 1.78 | 12.4 | -4.09 | -- | 2.88 | -- | -0.856 | -1.45 | -- | 10.46 | 1441 | 7.26 | -- |
| 1287.95 | 1.68 | 12 | -3.35 | 2.86 | -- | 1.09 | -- | -0.499 | 9.01 | -- | -- | -- | -- |
| 1292.04 | 1.68 | 12 | -3.31 | 2.86 | -- | -- | -- | -0.498 | 9.03 | -- | -- | -- | -- |
| 1469.81 | 1.79 | 12.3 | -3.96 | -- | 2.87 | -- | -- | -1.43 | -- | 10.46 | 1442 | 7.3 | -- |
| 1237.46 | 1.64 | 12.2 | -- | 2.97 | 2.95 | -- | -- | -1.15 | 9.14 | 27.44 | 15054 | 7.08 | -- |
| 1761.88 | 1.96 | 12.1 | -3.31 | -- | -- | -- | -- | -0.481 | -- | -- | -- | -- | -- |
| 1580.3 | 1.86 | 11.9 | -- | 2.86 | -- | -- | -- | -0.13 | 9.11 | -- | -- | -- | -- |
| 1708.46 | 1.93 | 12.2 | -- | -- | 3.39 | -- | -- | -0.833 | -- | 27.97 | 15868 | 6.66 | -- |
| 2051.15 | 2.11 | 12 | -- | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 912.95 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 16 | 913.67 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 17 | 913.89 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 20 | 914.24 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 22 | 914.45 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 24 | 914.67 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 27 | 915.29 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 47 | 918.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 48 | 918.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 49 | 919.50 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 50 | 919.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 51 | 920.29 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 112 | 922.57 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 113 | 922.61 | temperature | 30.0 | 43200 | > th | dose dependent | sin | 12 | NA |
| 144 | 924.89 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 223 | 927.85 | wind | 1.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 330 | 931.36 | temperature | 30.0 | 43200 | > th | dose dependent | no | NA | NA |
| 498 | 934.35 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 523 | 934.86 | wind | 1.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 562 | 935.63 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 571 | 936.45 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 595 | 937.19 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 597 | 937.26 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 600 | 937.35 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 607 | 937.59 | temperature | 30.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 625 | 937.85 | temperature | 30.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 634 | 938.15 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 644 | 938.47 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 723 | 940.36 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 765 | 941.26 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 767 | 941.30 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 777 | 941.58 | temperature | 20.0 | 43200 | > th | dose independent | sin | 18 | NA |
| 778 | 941.58 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 782 | 941.63 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 5 | 7 |
| 783 | 941.64 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 786 | 941.66 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 803 | 941.68 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 893 | 942.20 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 913 | 942.45 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 928 | 942.61 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 992 | 943.27 | temperature | 20.0 | 43200 | < th | dose independent | sin | 17 | NA |