BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0141200 Os06g0141200|AK061234
(145 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15680.1 | chr3:5315437-5316048 FORWARD LENGTH=165 140 2e-34
AT5G25490.1 | chr5:8876639-8877339 FORWARD LENGTH=171 132 5e-32
AT2G26695.1 | chr2:11365275-11365789 FORWARD LENGTH=139 114 1e-26
AT2G17975.1 | chr2:7822238-7823970 REVERSE LENGTH=269 75 1e-14
AT1G48570.1 | chr1:17955455-17957661 REVERSE LENGTH=456 54 2e-08
AT1G70650.1 | chr1:26638158-26640126 FORWARD LENGTH=467 51 3e-07
AT5G17790.1 | chr5:5869810-5872671 REVERSE LENGTH=759 47 4e-06
>AT3G15680.1 | chr3:5315437-5316048 FORWARD LENGTH=165
Length = 164
Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 97/158 (61%), Gaps = 20/158 (12%)
Query: 6 KPGDWNCKSCQHLNFSRRDYCQRCHTPRQD------LPLGD----GYVPGGVLTSLDIRP 55
+PGDWNC+SC HLNF RRD CQRC R L G+ G T D+RP
Sbjct: 3 RPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDVRP 62
Query: 56 GDWYC---NCGYHNFASRASCFKCGAIVKDLPAGQGG------GVANGDFARA-LDSSAV 105
GDWYC NCG HNFASR++CFKCG + AG GG + + D R+ + +
Sbjct: 63 GDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPGNGG 122
Query: 106 RAGWKAGDWICTRPGCNVHNFASRIECYRCNAPREAGN 143
R+ WK+GDWICTR GCN HNFASR+EC+RCNAPR+ N
Sbjct: 123 RSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRDFSN 160
>AT5G25490.1 | chr5:8876639-8877339 FORWARD LENGTH=171
Length = 170
Score = 132 bits (333), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 92/161 (57%), Gaps = 26/161 (16%)
Query: 6 KPGDWNCKSCQHLNFSRRDYCQRCHTPR-----QDLPLGDGYVP----GGVLTSLDIRPG 56
+PGDWNC+ C HLNF RRD CQRC PR DL G G P G T D+RPG
Sbjct: 3 RPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVRPG 62
Query: 57 DWYCN---CGYHNFASRASCFKCGAI--------------VKDLPAGQGGGVANGDFARA 99
DWYCN CG HNFA+R+SCFKCGA D+ G G+ + +
Sbjct: 63 DWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGSSS 122
Query: 100 LDSSAVRAGWKAGDWICTRPGCNVHNFASRIECYRCNAPRE 140
R+ WK+GDWIC R GCN HNFASR EC+RCNAP+E
Sbjct: 123 GGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163
>AT2G26695.1 | chr2:11365275-11365789 FORWARD LENGTH=139
Length = 138
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 81/142 (57%), Gaps = 14/142 (9%)
Query: 8 GDWNCKSCQHLNFSRRDYCQRCHTPRQDLPLGDGYVPGGVLTSLDIRPGDWYC---NCGY 64
GDW C +CQH NF +R+ CQ+C P+ G V + ++ GDWYC NCG
Sbjct: 6 GDWLCGACQHANFKKRESCQKCGYPK----FGGVDVSTYLYNRTEVMAGDWYCGALNCGS 61
Query: 65 HNFASRASCFKCGAIVKDLPAGQGGG--VANGDFARALDSSAVRAGWKAGDWICTRPGCN 122
HN+ASR SC++CG I + G VA G+ D +A GWK GDW+C R GC
Sbjct: 62 HNYASRTSCYRCGMIKVEYTEQYYGAQMVAYGN-----DGAACPPGWKTGDWVCPRVGCG 116
Query: 123 VHNFASRIECYRCNAPREAGNV 144
VHN+ASR EC++C R+ G V
Sbjct: 117 VHNYASRAECFKCKTTRDYGGV 138
>AT2G17975.1 | chr2:7822238-7823970 REVERSE LENGTH=269
Length = 268
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 35/166 (21%)
Query: 6 KPGDWNCKSCQHLNFSRRDYCQRCHTPRQDLPLGDGYVPGGVLTSLDIRPGDWYCN-CGY 64
+ GDW C C++ N++ R +C RC PR L + + P R GDW C C
Sbjct: 5 REGDWECLGCRNRNYAFRSFCNRCKQPR--LIMDNNTSPNSKWLP---RIGDWICTGCTN 59
Query: 65 HNFASRASCFKCGAIVKDLPAGQGGGVANGD-----------------------FARALD 101
+N+ASR C KCG K++ A + F+ A +
Sbjct: 60 NNYASREKCKKCGQ-SKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGSLLAFSNATN 118
Query: 102 SSAVRAGWKAGDWICTRPGCNVHNFASRIECYRCN--APREAGNVK 145
++V W++GDWIC C HN++SRI+C +CN AP G +
Sbjct: 119 QASVHKEWRSGDWICR---CGFHNYSSRIQCKKCNEIAPLALGTKR 161
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 74/209 (35%), Gaps = 78/209 (37%)
Query: 8 GDWNCKSCQHLNFSRRDYCQRCHTPRQDLPLGDGYVPGGVLTS----------------- 50
GDW C C + N++ R+ C++C ++ L +PG L +
Sbjct: 50 GDWICTGCTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGS 109
Query: 51 --------------LDIRPGDWYCNCGYHNFASRASCFKC-------------------- 76
+ R GDW C CG+HN++SR C KC
Sbjct: 110 LLAFSNATNQASVHKEWRSGDWICRCGFHNYSSRIQCKKCNEIAPLALGTKRLASEALAH 169
Query: 77 -----------------GAIVKDLPAGQGGGVANGD----FARALDSSAVRA----GWKA 111
AI P G V+N F + + A+ W+
Sbjct: 170 EWDSKRLNQGYTSMQTQSAIYASFPGMSLGRVSNWQLPLPFLQQHSTPALLGMGVKQWRD 229
Query: 112 GDWICTRPGCNVHNFASRIECYRCNAPRE 140
GDW+CT C HN+ASR EC RC R+
Sbjct: 230 GDWMCT--NCKNHNYASRAECNRCKTTRD 256
>AT1G48570.1 | chr1:17955455-17957661 REVERSE LENGTH=456
Length = 455
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 51/133 (38%), Gaps = 31/133 (23%)
Query: 8 GDWNCKSCQHLNFSRRDYCQRCHTPRQDLPLGDGYVPGGVLTSLDIRPGDWYC-NCGYHN 66
DW C C +NF+R + C+ C+ + D V ++ GDW C C + N
Sbjct: 301 ADWACPKCDFVNFARNERCRECNE------VADRRPVAAV-----VKEGDWLCPECSFLN 349
Query: 67 FASRASCFKCGAIVKDLPAGQGGGVANGDFARALDSSAVRAGWKAGDWICTRPGCNVHNF 126
F SC KC A G ++ K GDW CT GC NF
Sbjct: 350 FTRNQSCLKCKA----------KGPKKTSMVNIVE-------MKKGDWNCT--GCGYMNF 390
Query: 127 ASRIECYRCNAPR 139
AS +C C R
Sbjct: 391 ASNKQCRECREQR 403
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 53/141 (37%), Gaps = 37/141 (26%)
Query: 6 KPGDWNCKSCQHLNFSRRDYCQRCHTPRQDLPLGDGYVPGGVLTSLDIRPGDWYCN-CGY 64
K GDW C C LNF+R C +C G ++ ++++ GDW C CGY
Sbjct: 336 KEGDWLCPECSFLNFTRNQSCLKCK--------AKGPKKTSMVNIVEMKKGDWNCTGCGY 387
Query: 65 HNFASRASCFKCGAIVKDLPAGQGGGVANGDFARALDSSAVRAGWKAGDWICTRPGCNVH 124
NFAS C +C A + GDW C P C+
Sbjct: 388 MNFASNKQCRECREQRHKTLA------------------------EPGDWEC--PSCDFV 421
Query: 125 NFASRIECYRCN--APREAGN 143
NF C +C P +A N
Sbjct: 422 NFRRNDACKKCECKRPSQANN 442
>AT1G70650.1 | chr1:26638158-26640126 FORWARD LENGTH=467
Length = 466
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 31/143 (21%)
Query: 4 QRKPGDWNCKSCQHLNFSRRDYCQRCHTPRQDLPLGDGYVPGGVLTSLDIRPGDWYC-NC 62
+++PGDW C C+ LNF++ C RC ++ + L ++ GDW C C
Sbjct: 232 RKRPGDWYCTECKFLNFAKNIRCLRCDVFSEERL---KQLKEEQKDHLPLKKGDWICQTC 288
Query: 63 GYHNFASRASCFKCGAIVKDLPAGQGGGVANGDFARALDSSAVRAGWKAGDWICTRPGCN 122
+ NF+ C +C KD P R ++ G+W C CN
Sbjct: 289 NFLNFSKNTRCLRC----KDKPT-----------LRQIN---------PGEWEC--ESCN 322
Query: 123 VHNFASRIECYRCNAPRE-AGNV 144
NF C +C+ R+ A NV
Sbjct: 323 YINFRRNSICLKCDHKRQKAANV 345
>AT5G17790.1 | chr5:5869810-5872671 REVERSE LENGTH=759
Length = 758
Score = 47.0 bits (110), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 21/117 (17%)
Query: 2 NIQRKPGDWNCKSCQHLNFSRRDYCQRCHTPRQDLPLGDGYVPGGVLTSLDIRPGDWYC- 60
N++ K GDW C C +NF+R C +C R P LT +W C
Sbjct: 272 NVEMKRGDWICSRCSGMNFARNVKCFQCDEAR----------PKRQLTG-----SEWECP 316
Query: 61 NCGYHNFASRASCFKCGAIVKDLPAGQGGGVANGDFAR--ALDSSAVRAGWKAGDWI 115
C ++N+ +C +C P AN D++ L+ V KA W+
Sbjct: 317 QCDFYNYGRNVACLRCDC---KRPRDSSLNSANSDYSSDPELERRLVENEKKAQRWL 370
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.140 0.499
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,740,547
Number of extensions: 155455
Number of successful extensions: 337
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 15
Length of query: 145
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 56
Effective length of database: 8,666,545
Effective search space: 485326520
Effective search space used: 485326520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 107 (45.8 bits)