BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0116500 Os06g0116500|AK068442
(366 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0116500 Pleckstrin homology-type domain containing pro... 739 0.0
Os02g0102800 Pleckstrin homology-type domain containing pro... 529 e-150
Os10g0455900 Pleckstrin homology-type domain containing pro... 337 6e-93
Os08g0439100 Pleckstrin homology-type domain containing pro... 100 1e-21
>Os06g0116500 Pleckstrin homology-type domain containing protein
Length = 366
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/366 (96%), Positives = 354/366 (96%)
Query: 1 MMMSSSTSRREAAAKSSELGRAGGVDXXXXXXXXXXXXGELPKVSAAATAAVRHEGWMLR 60
MMMSSSTSRREAAAKSSELGRAGGVD GELPKVSAAATAAVRHEGWMLR
Sbjct: 1 MMMSSSTSRREAAAKSSELGRAGGVDPPRPSAAAMARSGELPKVSAAATAAVRHEGWMLR 60
Query: 61 YGRRKIGRSFVRTRYFVLDNKLLAYYKKQPKDNMVPVKALQIDGNCRVEDRGLKTHHGQM 120
YGRRKIGRSFVRTRYFVLDNKLLAYYKKQPKDNMVPVKALQIDGNCRVEDRGLKTHHGQM
Sbjct: 61 YGRRKIGRSFVRTRYFVLDNKLLAYYKKQPKDNMVPVKALQIDGNCRVEDRGLKTHHGQM 120
Query: 121 VYVLCIYNKKEKENHITMGAHDIEDALVWKKKLELLIDQQQDTMTAKNRKAFASLDFDME 180
VYVLCIYNKKEKENHITMGAHDIEDALVWKKKLELLIDQQQDTMTAKNRKAFASLDFDME
Sbjct: 121 VYVLCIYNKKEKENHITMGAHDIEDALVWKKKLELLIDQQQDTMTAKNRKAFASLDFDME 180
Query: 181 FGGPLSFSDRDSGPEDEEEPRPTLLRRTTIGNGPPDSVHDWTKEPDIGLSDQNDTNHAYS 240
FGGPLSFSDRDSGPEDEEEPRPTLLRRTTIGNGPPDSVHDWTKEPDIGLSDQNDTNHAYS
Sbjct: 181 FGGPLSFSDRDSGPEDEEEPRPTLLRRTTIGNGPPDSVHDWTKEPDIGLSDQNDTNHAYS 240
Query: 241 RKNWRLLRCQNGLRIFEELVEVEYLARSCSRAMRAVGVVEATCESIFGLIMSMDVTRYEW 300
RKNWRLLRCQNGLRIFEELVEVEYLARSCSRAMRAVGVVEATCESIFGLIMSMDVTRYEW
Sbjct: 241 RKNWRLLRCQNGLRIFEELVEVEYLARSCSRAMRAVGVVEATCESIFGLIMSMDVTRYEW 300
Query: 301 DCSFQYGSLVEEVDGHTAILYHRLQLNWFSMLVWPRDLCYVRYWRRNDDGSYGNLWMSPC 360
DCSFQYGSLVEEVDGHTAILYHRLQLNWFSMLVWPRDLCYVRYWRRNDDGSYGNLWMSPC
Sbjct: 301 DCSFQYGSLVEEVDGHTAILYHRLQLNWFSMLVWPRDLCYVRYWRRNDDGSYGNLWMSPC 360
Query: 361 WSLSSF 366
WSLSSF
Sbjct: 361 WSLSSF 366
>Os02g0102800 Pleckstrin homology-type domain containing protein
Length = 804
Score = 529 bits (1363), Expect = e-150, Method: Compositional matrix adjust.
Identities = 264/377 (70%), Positives = 297/377 (78%), Gaps = 21/377 (5%)
Query: 1 MMMSSSTSRRE-------AAAKSSELGRAGGVDXXXXXXXXX------------XXXGEL 41
MM+SSS SRRE ++ KS EL + G +
Sbjct: 1 MMLSSSASRREVGGGGAASSTKSGELSLSKVASVAIRESSGSGSGGISKSSELLSRAGTM 60
Query: 42 PKVSAAATAAVRHEGWMLRYGRRKIGRSFVRTRYFVLDNKLLAYYKKQPKDNMVPVKALQ 101
AA AAV HEGWM+RYGRRKIGRSF TRYFVLD++LLAYYKK+PKDNMVP+K+L
Sbjct: 61 AAAREAAAAAVHHEGWMVRYGRRKIGRSFFHTRYFVLDSRLLAYYKKKPKDNMVPLKSLL 120
Query: 102 IDGNCRVEDRGLKTHHGQMVYVLCIYNKKEKENHITMGAHDIEDALVWKKKLELLIDQQQ 161
IDGNCRVEDRGLKTHHGQMVYVLC+YNKKEKE+ ITMGA+DIEDAL WKK +EL+IDQQ+
Sbjct: 121 IDGNCRVEDRGLKTHHGQMVYVLCVYNKKEKEHQITMGAYDIEDALAWKKNIELIIDQQE 180
Query: 162 DTMTAKNRKAFASLDFDMEFGGPLSFSDRDSGPEDEEEPRPTLLRRTTIGNGPPDSVHDW 221
+ MT+KNRKAFAS+DFD E GG FSD DS EDEEE RP L+RRTTIGNGPP+S+HDW
Sbjct: 181 N-MTSKNRKAFASMDFDTELGGQFIFSDHDSAAEDEEE-RPMLIRRTTIGNGPPESIHDW 238
Query: 222 TKEPDIGLSDQNDTNHAYSRKNWRLLRCQNGLRIFEELVEVEYLARSCSRAMRAVGVVEA 281
TKE DIG +Q D S+KNWRLLRCQNGLRIFEEL+E +YLARSCSRAMRAVGVVEA
Sbjct: 239 TKEHDIGPPNQIDPIQVSSKKNWRLLRCQNGLRIFEELLEFDYLARSCSRAMRAVGVVEA 298
Query: 282 TCESIFGLIMSMDVTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLNWFSMLVWPRDLCYV 341
TCE+IFGL+MSMDVTRYEWDCSF+YGSLVEEVDGHTAILYH+LQL+W MLVWPRDLCYV
Sbjct: 299 TCEAIFGLVMSMDVTRYEWDCSFRYGSLVEEVDGHTAILYHKLQLHWCPMLVWPRDLCYV 358
Query: 342 RYWRRNDDGSYGNLWMS 358
RYWRRNDDGSY L+ S
Sbjct: 359 RYWRRNDDGSYVVLFRS 375
>Os10g0455900 Pleckstrin homology-type domain containing protein
Length = 315
Score = 337 bits (865), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 159/264 (60%), Positives = 211/264 (79%), Gaps = 9/264 (3%)
Query: 52 VRHEGWMLRYGRRKIGRSFVRTRYFVLDNKLLAYYKKQPKDNM--VPVKALQIDGNCRVE 109
V +EGWM+RYGRRKIGRSF+ RYFVL+ +LL+YYK++P+ M +P+K+L IDGNCRVE
Sbjct: 8 VVYEGWMVRYGRRKIGRSFIHMRYFVLETRLLSYYKRKPQHKMPKLPIKSLHIDGNCRVE 67
Query: 110 DRGLKTHHGQMVYVLCIYNKKEKENHITMGAHDIEDALVWKKKLELLIDQQQDTMTAKNR 169
DRGLK HHG M+YVLC+YNK+EK ITM A +I++AL+WK+K+E++IDQQQ + +
Sbjct: 68 DRGLKMHHGHMLYVLCVYNKREKHQRITMAAFNIQEALIWKEKIEMVIDQQQGVVASDGN 127
Query: 170 KAFASLD--FDMEFGGPLSFSDRDS-----GPEDEEEPRPTLLRRTTIGNGPPDSVHDWT 222
A +S +E G SFSD +S E+EE+ + +L+RRTTIGNGPP+S++DWT
Sbjct: 128 LAHSSSQQKVSLENGRKSSFSDHESLYSHEEEEEEEDNQRSLMRRTTIGNGPPESLYDWT 187
Query: 223 KEPDIGLSDQNDTNHAYSRKNWRLLRCQNGLRIFEELVEVEYLARSCSRAMRAVGVVEAT 282
+E D+G+S+Q +H +SR++WRL+RCQNGLRIFEEL +V+YLARSCSRAM+AVGVVEA+
Sbjct: 188 RENDLGISNQGSPDHVFSRRHWRLVRCQNGLRIFEELQDVDYLARSCSRAMKAVGVVEAS 247
Query: 283 CESIFGLIMSMDVTRYEWDCSFQY 306
CE+IF L+MSMD TRYEWDCSF +
Sbjct: 248 CEAIFQLVMSMDTTRYEWDCSFHW 271
>Os08g0439100 Pleckstrin homology-type domain containing protein
Length = 763
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 141/319 (44%), Gaps = 35/319 (10%)
Query: 57 WMLRYGRRKIGRSFVRTRYFVLDNKLLAYYKKQPKDN--MVPVKALQIDGNCRVEDRGLK 114
W+ G IG + R+ V+ K +A YK+ P N + P++ + VE+ G +
Sbjct: 52 WVYHLGVNSIGHEYRHLRFLVIRGKTVAMYKRDPSKNPGIQPIRKGVVSHTLMVEELGRR 111
Query: 115 -THHGQMVYVLCIYNKKEKENHITMGAHDIEDALVWKKKLELLIDQQQDTMTAKNRKAFA 173
T HG++ YVL YN+ ++ + D +A W + E +A
Sbjct: 112 ITSHGEL-YVLRFYNRLDQTKKGEIACGDPGEARKWVEAFE---------------QAKQ 155
Query: 174 SLDFDMEFGGPLSFSDRDSGPE---DEEEPR-----PTLLRRTTIGNGPPDSVHDWTKEP 225
D+D+ G +S++ + E D PR L + IG GP + +
Sbjct: 156 QADYDLMTRG-VSWNRSQNENELNLDGHRPRVRRYAQGLGKLVRIGKGPEKLLRQSSNLQ 214
Query: 226 DIGLSDQN---DTNHAYSRKNWRLLRCQNGLRIFEELVEVEYLARSCSRAMRAVGVVEAT 282
+ + N D+ A+ WR +R NG+RIFE++ + +++VGVV A
Sbjct: 215 SHEIINTNFGGDSGDAFEAHEWRYVRTFNGIRIFEDIANTK---GGKGVLLKSVGVVGAN 271
Query: 283 CESIFGLIMSMDV-TRYEWDCSFQYGSLVEEVDGHTAILYHRLQLNWFSMLVWPRDLCYV 341
+++F +++S D RYEWD LVE +DG+ ++Y + + S +D +
Sbjct: 272 PDTVFAVVLSSDKHKRYEWDMLTADLELVETIDGYYDVVYGTYEPRYLSWWKTKKDFVFS 331
Query: 342 RYWRRNDDGSYGNLWMSPC 360
R W R DG+Y L + C
Sbjct: 332 RQWFRGQDGAYTILQIPAC 350
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,033,155
Number of extensions: 570620
Number of successful extensions: 1147
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1141
Number of HSP's successfully gapped: 4
Length of query: 366
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 264
Effective length of database: 11,709,973
Effective search space: 3091432872
Effective search space used: 3091432872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)