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Os08g0439100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pleckstrin homology-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0128) R2 : 0.564
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.755 (0.0323) R2dC : 0.524 R2C : 0.521
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.16 (0.027) R2dN8 : 0.043 R2N8 : 0.0401
σ : 0.242
deviance : 26.83
__
_____
C
peak time of C : 3.35
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.64 0.203 10.1 -0.606 0.772 -0.434 -0.112 0.671 0.0256 3.55 22.55 547 -- --
19 0.203 10.1 -0.539 0.79 -0.637 -0.125 -- 0.0455 3.5 21.75 422 -- --
18.66 0.201 10.1 -0.605 0.765 -0.424 -- 0.685 0.027 3.56 22.4 609 -- --
19.04 0.203 10.1 -0.537 0.785 -0.629 -- -- 0.0443 3.52 21.81 438 -- --
47.96 0.323 10.1 -0.721 -- -0.601 -- 0.874 -0.0424 -- 27.92 1089 -- --
22.63 0.223 10.1 -0.4 0.764 -- -0.102 -- 0.115 3.35 -- -- -- --
22.66 0.223 10.1 -0.398 0.763 -- -- -- 0.115 3.35 -- -- -- --
48.98 0.326 10.1 -0.561 -- -0.65 -- -- -0.0119 -- 27.55 1088 -- --
25.65 0.236 10.1 -- 0.772 -0.322 -- -- 0.128 3.44 22.4 400 -- --
55.5 0.348 10.1 -0.365 -- -- -- -- 0.135 -- -- -- -- --
26.83 0.242 10.1 -- 0.755 -- -- -- 0.16 3.35 -- -- -- --
49.81 0.33 10 -- -- 0.776 -- -- 0.264 -- 49.45 1133 -- --
59.02 0.359 10.1 -- -- -- -- -- 0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.05 temperature 15.0 270 > th dose independent rect. 1 20
3 17.08 radiation 20.0 270 < th dose independent rect. 1 8
4 17.13 temperature 15.0 270 > th dose independent rect. 24 22
5 17.14 radiation 40.0 270 < th dose dependent rect. 1 8
11 17.24 radiation 40.0 10 < th dose independent rect. 3 19
12 17.27 atmosphere 1010.0 270 < th dose independent rect. 12 9
16 17.36 temperature 10.0 270 > th dose dependent rect. 1 7
17 17.36 radiation 10.0 270 < th dose dependent rect. 1 18
21 17.38 radiation 40.0 90 < th dose dependent rect. 3 19
24 17.44 atmosphere 995.0 270 > th dose dependent rect. 20 5
27 17.47 temperature 20.0 270 > th dose independent rect. 12 9
30 17.49 radiation 40.0 90 < th dose dependent rect. 3 8
36 17.52 atmosphere 995.0 270 > th dose dependent rect. 19 7
42 17.53 radiation 40.0 10 < th dose dependent rect. 3 19
48 17.58 temperature 15.0 270 > th dose independent rect. 14 16
49 17.58 atmosphere 1010.0 270 < th dose independent rect. 14 16
66 17.66 wind 9.0 270 < th dose independent rect. 1 19
67 17.66 radiation 20.0 90 < th dose independent rect. 3 19
71 17.67 radiation 40.0 90 < th dose dependent rect. 3 6
76 17.69 humidity 50.0 90 > th dose dependent rect. 3 6
78 17.70 temperature 10.0 270 > th dose dependent rect. 1 19
79 17.71 humidity 70.0 270 > th dose independent rect. 1 7
81 17.71 radiation 30.0 90 < th dose independent rect. 3 8
82 17.71 precipitation 0.1 270 < th dose independent rect. 1 19
84 17.71 precipitation 0.1 270 < th dose dependent rect. 1 19
88 17.73 humidity 50.0 90 > th dose dependent rect. 3 8
90 17.74 precipitation 0.1 270 < th dose independent rect. 20 5
93 17.74 precipitation 0.1 270 < th dose dependent rect. 20 5
95 17.74 humidity 50.0 270 > th dose dependent rect. 1 7
102 17.76 temperature 10.0 270 > th dose independent rect. 20 5
103 17.76 temperature 30.0 270 < th dose independent rect. 20 5
104 17.76 humidity 50.0 270 > th dose independent rect. 20 5
107 17.76 atmosphere 995.0 270 > th dose independent rect. 20 5
108 17.76 radiation 1.0 270 < th dose independent rect. 20 5
113 17.76 precipitation 0.1 270 < th dose independent rect. 1 7
115 17.76 atmosphere 1015.0 270 < th dose independent rect. 1 19
117 17.76 radiation 1.0 270 < th dose dependent rect. 20 5
122 17.76 precipitation 0.1 270 < th dose dependent rect. 1 7
124 17.77 wind 9.0 270 < th dose independent rect. 20 5
127 17.77 radiation 10.0 270 < th dose independent rect. 1 18
142 17.81 atmosphere 1010.0 90 < th dose independent rect. 3 6
143 17.81 radiation 20.0 90 < th dose independent rect. 3 6
146 17.81 humidity 50.0 270 > th dose independent rect. 1 18
155 17.83 atmosphere 995.0 10 > th dose dependent rect. 22 5
158 17.84 wind 9.0 270 < th dose independent rect. 1 7
159 17.84 temperature 10.0 270 > th dose independent rect. 1 7
161 17.84 temperature 30.0 270 < th dose independent rect. 1 7
162 17.84 humidity 50.0 270 > th dose independent rect. 1 7
164 17.84 atmosphere 995.0 270 > th dose independent rect. 1 7
165 17.84 atmosphere 1015.0 270 < th dose independent rect. 1 7
166 17.84 temperature 10.0 270 > th dose independent rect. 8 17
213 17.88 precipitation 0.1 270 < th dose independent rect. 8 17
214 17.88 atmosphere 995.0 90 > th dose independent rect. 3 18
220 17.88 precipitation 0.1 270 < th dose dependent rect. 8 17
226 17.89 wind 9.0 270 < th dose dependent rect. 1 6
264 17.92 wind 1.0 90 > th dose independent rect. 22 16
265 17.92 atmosphere 1010.0 90 < th dose independent rect. 3 19
266 17.92 wind 9.0 90 < th dose dependent rect. 3 6
289 17.94 humidity 50.0 270 > th dose dependent rect. 20 5
313 17.96 atmosphere 995.0 270 > th dose independent rect. 1 19
326 17.98 wind 9.0 270 < th dose independent rect. 12 8
327 17.98 humidity 50.0 270 > th dose independent rect. 20 16
343 17.99 radiation 40.0 270 < th dose independent rect. 1 18
356 18.00 wind 1.0 270 > th dose independent rect. 20 5
365 18.00 wind 9.0 10 < th dose dependent rect. 3 6
367 18.00 humidity 50.0 90 > th dose dependent rect. 3 18
383 18.02 radiation 40.0 10 < th dose independent rect. 3 8
400 18.03 wind 9.0 270 < th dose independent rect. 8 17
411 18.03 atmosphere 1015.0 270 < th dose dependent rect. 14 16
440 18.05 temperature 10.0 270 > th dose independent rect. 20 16
441 18.05 atmosphere 995.0 270 > th dose independent rect. 20 16
444 18.05 atmosphere 1015.0 270 < th dose dependent rect. 3 2
447 18.06 atmosphere 1015.0 270 < th dose dependent rect. 1 5
449 18.06 temperature 30.0 90 < th dose dependent rect. 21 6
457 18.07 precipitation 0.1 10 < th dose independent rect. 3 6
458 18.07 wind 1.0 270 > th dose independent rect. 12 8
467 18.07 precipitation 0.1 10 < th dose dependent rect. 3 6
471 18.08 precipitation 0.1 90 < th dose independent rect. 3 5
474 18.08 radiation 40.0 270 < th dose independent rect. 14 16
478 18.08 precipitation 0.1 90 < th dose dependent rect. 3 5
497 18.09 precipitation 0.1 10 < th dose independent rect. 9 18
499 18.09 temperature 20.0 30 > th dose independent rect. 14 19
514 18.09 precipitation 0.1 10 < th dose dependent rect. 9 18
518 18.10 humidity 60.0 90 > th dose independent rect. 3 6
524 18.10 humidity 50.0 270 > th dose independent rect. 14 16
526 18.10 wind 9.0 10 < th dose independent rect. 3 19
528 18.10 temperature 20.0 270 > th dose independent rect. 12 20
535 18.10 temperature 30.0 270 < th dose dependent rect. 6 19
539 18.11 wind 1.0 270 > th dose independent rect. 19 7
590 18.13 precipitation 0.1 270 < th dose independent rect. 20 16
594 18.13 atmosphere 995.0 10 > th dose independent rect. 3 19
597 18.13 atmosphere 1015.0 90 < th dose dependent rect. 3 5
600 18.13 precipitation 0.1 270 < th dose dependent rect. 20 16
602 18.14 wind 9.0 90 < th dose independent rect. 3 5
603 18.14 temperature 10.0 90 > th dose independent rect. 3 5
605 18.14 temperature 30.0 90 < th dose independent rect. 3 5
608 18.14 atmosphere 995.0 90 > th dose independent rect. 3 5
613 18.14 precipitation 0.1 270 < th dose independent rect. 12 8
624 18.14 precipitation 0.1 270 < th dose dependent rect. 12 8
627 18.14 humidity 50.0 10 > th dose dependent rect. 3 19
641 18.15 wind 9.0 270 < th dose independent rect. 20 16
650 18.15 humidity 50.0 270 > th dose dependent rect. 21 3
672 18.16 wind 9.0 270 < th dose independent rect. 14 16
676 18.16 precipitation 0.1 10 < th dose independent rect. 3 19
685 18.16 precipitation 0.1 10 < th dose dependent rect. 3 19
690 18.17 wind 5.0 10 < th dose independent rect. 22 5
700 18.17 wind 9.0 90 < th dose dependent rect. 21 6
707 18.18 precipitation 0.1 10 < th dose independent rect. 22 5
719 18.18 precipitation 0.1 10 < th dose dependent rect. 22 5
720 18.18 temperature 10.0 10 > th dose dependent rect. 3 6
731 18.19 wind 9.0 10 < th dose independent rect. 3 6
732 18.19 temperature 10.0 10 > th dose independent rect. 3 6
734 18.19 temperature 30.0 10 < th dose independent rect. 3 6
735 18.19 humidity 50.0 10 > th dose independent rect. 3 6
737 18.19 atmosphere 995.0 10 > th dose independent rect. 3 6
743 18.19 temperature 10.0 10 > th dose independent rect. 9 18
746 18.19 humidity 60.0 10 > th dose independent rect. 3 19
772 18.20 temperature 10.0 10 > th dose independent rect. 22 5
773 18.20 temperature 30.0 10 < th dose independent rect. 22 5
774 18.20 humidity 50.0 10 > th dose independent rect. 22 5
777 18.20 atmosphere 995.0 10 > th dose independent rect. 22 5
778 18.20 radiation 1.0 10 < th dose independent rect. 22 5
788 18.20 temperature 10.0 10 > th dose independent rect. 3 19
795 18.20 radiation 1.0 10 < th dose dependent rect. 22 5
813 18.21 radiation 40.0 10 < th dose independent rect. 3 6
822 18.21 wind 1.0 270 > th dose independent rect. 20 16
851 18.22 temperature 10.0 270 > th dose independent rect. 6 8
852 18.22 atmosphere 995.0 270 > th dose independent rect. 6 8
853 18.22 atmosphere 1015.0 270 < th dose independent rect. 6 8
886 18.23 wind 5.0 270 < th dose dependent rect. 3 2
887 18.23 wind 9.0 270 < th dose dependent rect. 3 2
889 18.23 humidity 50.0 10 > th dose dependent rect. 22 5
898 18.24 humidity 50.0 270 > th dose independent rect. 6 8
899 18.24 humidity 50.0 270 > th dose independent rect. 12 8
900 18.24 precipitation 0.1 270 < th dose independent rect. 6 8
910 18.24 humidity 60.0 270 > th dose dependent rect. 3 2
913 18.24 precipitation 0.1 270 < th dose dependent rect. 6 8
980 18.26 atmosphere 995.0 270 > th dose independent rect. 8 17