Os06g0116500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pleckstrin homology-type domain containing protein.
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Os06g0116500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pleckstrin homology-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.72 | 0.348 | 10.9 | 0.814 | 1.87 | -0.743 | 0.653 | 0.713 | 0.313 | 7.35 | 20.5 | 2090 | -- | -- |
| 55.22 | 0.346 | 11 | 0.599 | 1.89 | -0.757 | 0.613 | -- | 0.255 | 7.34 | 20.78 | 1320 | -- | -- |
| 55.75 | 0.348 | 10.9 | 0.918 | 1.9 | -0.705 | -- | 0.819 | 0.338 | 7.3 | 20.55 | 2585 | -- | -- |
| 55.81 | 0.348 | 11 | 0.615 | 1.9 | -0.826 | -- | -- | 0.248 | 7.35 | 20.5 | 1348 | -- | -- |
| 241.06 | 0.723 | 11 | 0.858 | -- | -0.881 | -- | 0.396 | 0.435 | -- | 21.3 | 2109 | -- | -- |
| 70.95 | 0.395 | 11 | 0.282 | 1.9 | -- | 0.673 | -- | 0.0767 | 7.41 | -- | -- | -- | -- |
| 72.18 | 0.398 | 11 | 0.297 | 1.9 | -- | -- | -- | 0.0756 | 7.41 | -- | -- | -- | -- |
| 223.62 | 0.696 | 11 | 0.777 | -- | -1.06 | -- | -- | 0.376 | -- | 20.8 | 603 | -- | -- |
| 64.92 | 0.375 | 11 | -- | 1.9 | -0.58 | -- | -- | 0.153 | 7.31 | 20.6 | 1233 | -- | -- |
| 264 | 0.759 | 11 | 0.328 | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
| 74.51 | 0.404 | 11 | -- | 1.9 | -- | -- | -- | 0.0425 | 7.4 | -- | -- | -- | -- |
| 168.3 | 0.604 | 11 | -- | -- | -1.3 | -- | -- | 0.387 | -- | 25.9 | 508 | -- | -- |
| 266.83 | 0.762 | 11.1 | -- | -- | -- | -- | -- | 0.0699 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 2 | 52.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 4 |
| 3 | 52.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 4 | 52.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 5 | 52.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 15 | 52.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 26 | 52.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 27 | 52.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 4 |
| 31 | 52.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 66 | 53.10 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 96 | 53.24 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 143 | 53.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 151 | 53.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 174 | 53.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 251 | 54.06 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 277 | 54.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 14 |
| 284 | 54.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 311 | 54.34 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 22 |
| 341 | 54.44 | temperature | 15 | 90 | > th | dose dependent | sin | 8 | NA |
| 396 | 54.65 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 12 |
| 404 | 54.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 413 | 54.73 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 14 |
| 591 | 55.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 598 | 55.35 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 638 | 55.43 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 639 | 55.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 640 | 55.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 652 | 55.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 666 | 55.50 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 676 | 55.52 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 687 | 55.55 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 778 | 55.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 788 | 55.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 796 | 55.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 889 | 55.81 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 908 | 55.84 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 943 | 55.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 965 | 55.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |