BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0116500 Os06g0116500|AK068442
(366 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G19040.2 | chr4:10431799-10437171 REVERSE LENGTH=725 444 e-125
AT5G45560.1 | chr5:18465561-18470752 FORWARD LENGTH=720 439 e-123
AT3G54800.1 | chr3:20286378-20289880 FORWARD LENGTH=734 130 1e-30
AT2G28320.1 | chr2:12095161-12099424 FORWARD LENGTH=738 127 1e-29
AT5G35180.4 | chr5:13424538-13432787 FORWARD LENGTH=812 84 1e-16
>AT4G19040.2 | chr4:10431799-10437171 REVERSE LENGTH=725
Length = 724
Score = 444 bits (1143), Expect = e-125, Method: Compositional matrix adjust.
Identities = 212/320 (66%), Positives = 257/320 (80%), Gaps = 12/320 (3%)
Query: 50 AAVRHEGWMLRYGRRKIGRSFVRTRYFVLDNKLLAYYKKQPKDNMVPVKALQIDGNCRVE 109
+ V +EGWM+RYGRRKIGRS++ RYFVL+ +LLAYYKK+P+D VP+K + IDGNCRVE
Sbjct: 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDYQVPIKTMLIDGNCRVE 61
Query: 110 DRGLKTHHGQMVYVLCIYNKKEKENHITMGAHDIEDALVWKKKLELLIDQQQDTMTAKNR 169
DRGLKTHHG MVYVL +YNKKEK + ITM A +I++AL+WK+K+E +IDQ Q++ N
Sbjct: 62 DRGLKTHHGHMVYVLSVYNKKEKSHRITMAAFNIQEALMWKEKIESVIDQHQESQVP-NG 120
Query: 170 KAFASLDFD--MEFGGPLSFSD---------RDSGPEDEEEPRPTLLRRTTIGNGPPDSV 218
+ + S ++ M+ G S SD R S EDEE+ R +L+RRTTIGNGPP+SV
Sbjct: 121 QQYVSFEYKSGMDTGRTASSSDHESQSAISFRFSAAEDEEDSRRSLMRRTTIGNGPPESV 180
Query: 219 HDWTKEPDIGLSDQNDTNHAYSRKNWRLLRCQNGLRIFEELVEVEYLARSCSRAMRAVGV 278
DWTKE D L++QN N A+SRK+WRLL+CQNGLRIFEEL+EV+YL RSCSRAM+AVGV
Sbjct: 181 LDWTKEFDAELANQNSDNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGV 240
Query: 279 VEATCESIFGLIMSMDVTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLNWFSMLVWPRDL 338
VEATCE IF L+MSMD TRYEWDCSFQ+GSLVEEVDGHTA+LYHRL L+WF M+VWPRDL
Sbjct: 241 VEATCEEIFELLMSMDGTRYEWDCSFQFGSLVEEVDGHTAVLYHRLLLDWFPMIVWPRDL 300
Query: 339 CYVRYWRRNDDGSYGNLWMS 358
CYVRYWRRNDDGSY L+ S
Sbjct: 301 CYVRYWRRNDDGSYVVLFRS 320
>AT5G45560.1 | chr5:18465561-18470752 FORWARD LENGTH=720
Length = 719
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/314 (66%), Positives = 255/314 (81%), Gaps = 6/314 (1%)
Query: 50 AAVRHEGWMLRYGRRKIGRSFVRTRYFVLDNKLLAYYKKQPKDNMVPVKALQIDGNCRVE 109
+ V +EGWM+RYGRRKIGRS++ RYFVL+ +LLAYYKK+P+DN +P+K + IDGNCRVE
Sbjct: 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDNQLPIKTMVIDGNCRVE 61
Query: 110 DRGLKTHHGQMVYVLCIYNKKEKENHITMGAHDIEDALVWKKKLELLIDQQQDTMTAKNR 169
DRGLKTHHG MVYVL IYNKKEK + ITM A +I++AL+WK+K+E +IDQ QD++ +
Sbjct: 62 DRGLKTHHGHMVYVLSIYNKKEKHHRITMAAFNIQEALMWKEKIECVIDQHQDSLVPSGQ 121
Query: 170 KAFASLDFD--MEFGGPLSFSDRDS---GPEDEEEPRPTLLRRTTIGNGPPDSVHDWTKE 224
+ + S ++ M+ G S SD +S EDE + + LLRRTTIGNGPP+S+ DWTKE
Sbjct: 122 Q-YVSFEYKPGMDAGRTASSSDHESPFSALEDENDSQRDLLRRTTIGNGPPESILDWTKE 180
Query: 225 PDIGLSDQNDTNHAYSRKNWRLLRCQNGLRIFEELVEVEYLARSCSRAMRAVGVVEATCE 284
D LS+Q+ +N A+SRK+WRLL+CQNGLRIFEEL+EV+YL RSCSRAM+AVGVVEATCE
Sbjct: 181 FDAELSNQSSSNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCE 240
Query: 285 SIFGLIMSMDVTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLNWFSMLVWPRDLCYVRYW 344
IF L+MSMD TRYEWDCSF G LVEEVDGHTAILYHRL L+WF M+VWPRDLCYVRYW
Sbjct: 241 EIFELVMSMDGTRYEWDCSFHNGRLVEEVDGHTAILYHRLLLDWFPMVVWPRDLCYVRYW 300
Query: 345 RRNDDGSYGNLWMS 358
RRNDDGSY L+ S
Sbjct: 301 RRNDDGSYVVLFRS 314
>AT3G54800.1 | chr3:20286378-20289880 FORWARD LENGTH=734
Length = 733
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 142/310 (45%), Gaps = 38/310 (12%)
Query: 53 RHEGWMLRYGRRKIGRSFVRTRYFVLDNKLLAYYKKQPKD-NMVPVKALQIDGNCRVEDR 111
R EGW+ + G F R RYFVL L +K P D N P + +D RV D
Sbjct: 9 RMEGWLYTIRHNRFGLQFSRKRYFVLHENNLTSFKSVPSDHNEEPERRASLDCCIRVTDN 68
Query: 112 GLKTHHGQMVYVLCIYNKKEKENHITMGAHDIEDALVWKKKLELLIDQQQDTMTAKNRKA 171
G ++ H +++++ +YN + + +GA E+A W + L+ D Q + +
Sbjct: 69 GRESFHRKILFIFTLYNTSNHLDQLKLGASSPEEAAKWIRSLQ---DASQKGFPIPDCEF 125
Query: 172 FASLDFDMEFG-GPLSFSDRDSGPEDEEEPRPTLLRRTTIGNGPPDSVHDWTKEPDIGLS 230
F S E G L S R+ R+ ++ DWT S
Sbjct: 126 FVS---HAEKGLVKLDVSKRNR-------------RKNSV---------DWTNYSSTNYS 160
Query: 231 ------DQNDTNHAYSRKNWRLLRCQNGLRIFEELVEVEYLARSCS--RAMRAVGVVEAT 282
+ N + W++ CQNGLR+F+E + + R A+ AVGV++ T
Sbjct: 161 STSLNVETNVAPDVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVIDGT 220
Query: 283 CESIFGLIMSMDVTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLNWFSMLVWPRDLCYVR 342
E IF +MS+ R EWD F G++VE +DGHT I++ +L +W + RDL R
Sbjct: 221 SEDIFNTLMSLGPLRSEWDFCFYKGNVVEHLDGHTDIIHLQLYSDWLPWGMNRRDLLLRR 280
Query: 343 YWRRNDDGSY 352
YWRR DDG+Y
Sbjct: 281 YWRREDDGTY 290
>AT2G28320.1 | chr2:12095161-12099424 FORWARD LENGTH=738
Length = 737
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 142/311 (45%), Gaps = 31/311 (9%)
Query: 50 AAVRHEGWMLRYGRRKIGRSFVRTRYFVLDNKLLAYYKKQPKDNMVPV-KALQIDGNCRV 108
+ + EGW+ + G F R RYFVL + LL +K ++ ID RV
Sbjct: 9 SETKMEGWLYIIRSNRFGLHFSRKRYFVLGDHLLKSFKSISDSKTKNAGRSAVIDSCIRV 68
Query: 109 EDRGLKTHHGQMVYVLCIYNKKEKENHITMGAHDIEDALVWKKKLELLIDQQQDTMTAKN 168
D G + H + ++ +YN + + +GA EDA W LI + A
Sbjct: 69 TDNGRENVHRKAFFIFTLYNTSNHNDQLKLGASSPEDAARWIN----LIKE-----AALK 119
Query: 169 RKAFASLDFDMEFGGPLSFSDRDSGPEDEEEPRPTLLRRTTIGNGPPDSVHDWTKEPDIG 228
F F+ S S DS L +++ + +S+ DWT
Sbjct: 120 GAPFPGDVFN------CSRSRWDS-----------LRLSSSVRDHHSNSI-DWTLRSSAR 161
Query: 229 LSDQNDTNHAYSRKNWRLLRCQNGLRIFEELVEVEYLAR-SCSRAMRAVGVVEATCESIF 287
+ T + W + CQNGLR+F+E E + L R A+ AVGVV+ T E+IF
Sbjct: 162 VDPV--TTDVVAPSPWTIFGCQNGLRLFKEAKERDSLGRWDDHPAIMAVGVVDGTSETIF 219
Query: 288 GLIMSMDVTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLNWFSMLVWPRDLCYVRYWRRN 347
++S+ +R EWD F GS+VE +DGHT I++ +L +W + RD RYWRR
Sbjct: 220 QTLLSLGPSRSEWDFCFYQGSVVEHLDGHTDIIHKQLYSDWLPWGMKRRDFSLRRYWRRE 279
Query: 348 DDGSYGNLWMS 358
DDG+Y L+ S
Sbjct: 280 DDGTYVILYHS 290
>AT5G35180.4 | chr5:13424538-13432787 FORWARD LENGTH=812
Length = 811
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 133/325 (40%), Gaps = 41/325 (12%)
Query: 56 GWMLRYGRRKIGRSFVRTRYFVLDNKLLAYYKKQPKDN--MVPVKALQIDGNCRVEDRGL 113
GW+ G KIG + R+ + K + YK+ P +N + P++ I +E+ G
Sbjct: 62 GWVYHLGVNKIGHEYCNLRFLFIRGKYVEMYKRDPHENPDIKPIRRGVIGPTMVIEELGR 121
Query: 114 -KTHHGQMVYVLCIYNKKEKENHITMGAHDIEDALVWKKKLELLIDQQQDTMTAKNRKAF 172
K +HG VYV+ YN+ ++ + +AL W + E + +Q A +R
Sbjct: 122 RKVNHGD-VYVIRFYNRLDESRKGEIACATAGEALKWVEAFE---EAKQQAEYALSRGGS 177
Query: 173 ASLDFDMEFGGPLSFSDRDSGPEDEEEPRPTLLRRT-------TIGNGPPDSV-HDWTKE 224
ME D E RP + R IG GP + T
Sbjct: 178 TRTKLSME------------ANIDLEGHRPRVRRYAYGLKKLIRIGQGPESLLRQSSTLV 225
Query: 225 PDI---GLSDQNDTNHAYSRKNWRLLRCQNGL-RIFEELV---------EVEYLARSCSR 271
D+ G + D A W+ +R N + R+F ++V +V
Sbjct: 226 NDVRGDGFYEGGDNGDAIEAHEWKCVRTINVIKRLFGKIVVLKRVRIFEDVANFKAGRGV 285
Query: 272 AMRAVGVVEATCESIFGLIMSMDV-TRYEWDCSFQYGSLVEEVDGHTAILYHRLQLNWFS 330
++AV VVEA+ +++F +++++D RYEWD ++ +GH ++Y + S
Sbjct: 286 LVKAVAVVEASADTVFEVLLNIDKHQRYEWDAVTGDSEKIDSYEGHYDVIYCIYDPKYLS 345
Query: 331 MLVWPRDLCYVRYWRRNDDGSYGNL 355
RD + R W R DG+Y L
Sbjct: 346 RWQSKRDFVFSRQWVRGQDGTYTIL 370
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,214,156
Number of extensions: 359763
Number of successful extensions: 737
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 729
Number of HSP's successfully gapped: 7
Length of query: 366
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 266
Effective length of database: 8,364,969
Effective search space: 2225081754
Effective search space used: 2225081754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)