BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0109500 Os06g0109500|Os06g0109500
         (303 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0109500  Haloacid dehalogenase-like hydrolase domain co...   453   e-128
Os09g0407700  Haloacid dehalogenase-like hydrolase domain co...   187   9e-48
Os10g0568900  Haloacid dehalogenase-like hydrolase domain co...   126   2e-29
AK069602                                                           90   2e-18

>Os06g0109500 Haloacid dehalogenase-like hydrolase domain containing protein
          Length = 303

 Score =  453 bits (1165), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/283 (80%), Positives = 227/283 (80%)

Query: 1   MAGIVEKEGETGHXXXXXXXXXXXXXNQAFVNIITVLMMVSLXXXXXXXXXXXXXXXXKR 60
           MAGIVEKEGETGH             NQAFVNIITVLMMVSL                KR
Sbjct: 1   MAGIVEKEGETGHLTSPTAPTLTTPTNQAFVNIITVLMMVSLMEEEAMAMETMATTTTKR 60

Query: 61  MSVAEVSLVEAVLFDIDGTMCVSDPFHHRAFSELLQALGYNSGVPITPEFGMAHMAGRSN 120
           MSVAEVSLVEAVLFDIDGTMCVSDPFHHRAFSELLQALGYNSGVPITPEFGMAHMAGRSN
Sbjct: 61  MSVAEVSLVEAVLFDIDGTMCVSDPFHHRAFSELLQALGYNSGVPITPEFGMAHMAGRSN 120

Query: 121 HQIGSFLFPDWPQHRLDAFFADKEALFARYAAEGLREVAGLTDLCRWAAARGLKRAAVTN 180
           HQIGSFLFPDWPQHRLDAFFADKEALFARYAAEGLREVAGLTDLCRWAAARGLKRAAVTN
Sbjct: 121 HQIGSFLFPDWPQHRLDAFFADKEALFARYAAEGLREVAGLTDLCRWAAARGLKRAAVTN 180

Query: 181 APRANADLMISILGLSDFFQVIVAAADDCDLPKPSPEPYLRALSLLGASPRHTLVFEDSX 240
           APRANADLMISILGLSDFFQVIVAAADDCDLPKPSPEPYLRALSLLGASPRHTLVFEDS 
Sbjct: 181 APRANADLMISILGLSDFFQVIVAAADDCDLPKPSPEPYLRALSLLGASPRHTLVFEDSV 240

Query: 241 XXXXXXXXXXMPVIXXXXXXXXXXXXXXXXSLVIRDYKDHKLW 283
                     MPVI                SLVIRDYKDHKLW
Sbjct: 241 VGVQAGVAAGMPVIAVAEEAREAKVVAAGASLVIRDYKDHKLW 283



>Os09g0407700 Haloacid dehalogenase-like hydrolase domain containing protein
          Length = 251

 Score =  187 bits (475), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 115/169 (68%), Gaps = 1/169 (0%)

Query: 69  VEAVLFDIDGTMCVSDPFHHRAFSELLQALGYNSGVPITPEFGMAHMAGRSNHQIGSFLF 128
           +EAVLFDIDGT+C SDP HH AF E+L  +GYN+GVPI  EF + ++AGRS+ +    LF
Sbjct: 21  IEAVLFDIDGTLCDSDPLHHVAFQEMLLEIGYNNGVPIDEEFFINNIAGRSDVEAAQNLF 80

Query: 129 PDWPQHRLDAFFADKEALFARYAAEGLREVAGLTDLCRWAAARGLKRAAVTNAPRANADL 188
           PDWP  +   F  DKEA +   A E L  V GL  + +W    G KRAAVTNAPR N++L
Sbjct: 81  PDWPLEKGLKFLEDKEAKYRSLAKERLEPVKGLAKVVQWVKDHGYKRAAVTNAPRINSEL 140

Query: 189 MISILGLSDFFQVIVAAADDCDLPKPSPEPYLRALSLLGASPRHTLVFE 237
           MIS+LGL+DFFQ ++    +C+ PKP+P PYL+AL  L  S  HT +FE
Sbjct: 141 MISLLGLTDFFQAVIVGG-ECEKPKPAPFPYLKALKELQVSADHTFIFE 188



>Os10g0568900 Haloacid dehalogenase-like hydrolase domain containing protein
          Length = 165

 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 84/136 (61%), Gaps = 1/136 (0%)

Query: 147 FARYAAEGLREVAGLTDLCRWAAARGLKRAAVTNAPRANADLMISILGLSDFFQVIVAAA 206
             R A E L  V GL DLCRW     LKRAAVTNAPR+NA+LM+S+LGL++FF V+V  +
Sbjct: 14  LCRLAPEQLVAVEGLHDLCRWIKDHKLKRAAVTNAPRSNAELMLSLLGLTEFFPVLVIGS 73

Query: 207 DDCDLPKPSPEPYLRALSLLGASPRHTLVFEDSXXXXXXXXXXXMPVIXXXXXXXXXXXX 266
            +CD  KP P+PYL+AL L+GASP HT +FEDS           +PV+            
Sbjct: 74  -ECDRAKPFPDPYLKALELIGASPDHTFIFEDSASGIRAGVAANVPVVGLTTRNPEKVLQ 132

Query: 267 XXXXSLVIRDYKDHKL 282
               SL+I+D++D KL
Sbjct: 133 DAGASLLIKDFQDPKL 148



>AK069602 
          Length = 492

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 49/64 (76%)

Query: 69  VEAVLFDIDGTMCVSDPFHHRAFSELLQALGYNSGVPITPEFGMAHMAGRSNHQIGSFLF 128
           +EAVLFDIDGT+C SDP HH AF E+L  +GYN+GVPI  EF + ++AGRS+ +    LF
Sbjct: 21  IEAVLFDIDGTLCDSDPLHHVAFQEMLLEIGYNNGVPIDEEFFINNIAGRSDVEAAQNLF 80

Query: 129 PDWP 132
           PDWP
Sbjct: 81  PDWP 84



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,464,658
Number of extensions: 280927
Number of successful extensions: 839
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 835
Number of HSP's successfully gapped: 4
Length of query: 303
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 203
Effective length of database: 11,814,401
Effective search space: 2398323403
Effective search space used: 2398323403
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)