BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0592400 Os05g0592400|AK065508
(1090 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0592400 UV-damaged DNA binding protein 2220 0.0
AK067427 2038 0.0
Os02g0137400 WD40-like domain containing protein 124 4e-28
Os04g0252200 CPSF A subunit, C-terminal domain containing p... 96 1e-19
>Os05g0592400 UV-damaged DNA binding protein
Length = 1090
Score = 2220 bits (5753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1078/1090 (98%), Positives = 1078/1090 (98%)
Query: 1 MSVWNYVVTAHKPTSVTHSCVGNFTGPNQLNLIVAKCTRIEIHLLTPQGLQPMIDVPIYG 60
MSVWNYVVTAHKPTSVTHSCVGNFTGPNQLNLIVAKCTRIEIHLLTPQGLQPMIDVPIYG
Sbjct: 1 MSVWNYVVTAHKPTSVTHSCVGNFTGPNQLNLIVAKCTRIEIHLLTPQGLQPMIDVPIYG 60
Query: 61 RIATLELFRPHNETQDFLFIATERYKFCVLQWDGEKSELLTRAMGDVSDRIGRPTDNGQI 120
RIATLELFRPHNETQDFLFIATERYKFCVLQWDGEKSELLTRAMGDVSDRIGRPTDNGQI
Sbjct: 61 RIATLELFRPHNETQDFLFIATERYKFCVLQWDGEKSELLTRAMGDVSDRIGRPTDNGQI 120
Query: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCVKPTIVVL 180
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCVKPTIVVL
Sbjct: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCVKPTIVVL 180
Query: 181 YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYC 240
YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGAGLLIPVPAPL YC
Sbjct: 181 YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGAGLLIPVPAPLGGVIIIGEETIVYC 240
Query: 241 NANSTFRAIPIKQSIIRAYGRVDPDGSRYLLGDNAGILHLLVLTHERERVTGLKIEYLGE 300
NANSTFRAIPIKQSIIRAYGRVDPDGSRYLLGDNAGILHLLVLTHERERVTGLKIEYLGE
Sbjct: 241 NANSTFRAIPIKQSIIRAYGRVDPDGSRYLLGDNAGILHLLVLTHERERVTGLKIEYLGE 300
Query: 301 TSIASSISYLDNGVVYVGSRFGDSQLVKLNLQADPNGSYVEVLERYVNLGPIVDFCVVDL 360
TSIASSISYLDNGVVYVGSRFGDSQLVKLNLQADPNGSYVEVLERYVNLGPIVDFCVVDL
Sbjct: 301 TSIASSISYLDNGVVYVGSRFGDSQLVKLNLQADPNGSYVEVLERYVNLGPIVDFCVVDL 360
Query: 361 DRQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGLWSLKSSFNDPYDMYLVV 420
DRQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGLWSLKSSFNDPYDMYLVV
Sbjct: 361 DRQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGLWSLKSSFNDPYDMYLVV 420
Query: 421 SFISETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAINDLLIQVTANSVRLVSCTSREL 480
SFISETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAINDLLIQVTANSVRLVSCTSREL
Sbjct: 421 SFISETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAINDLLIQVTANSVRLVSCTSREL 480
Query: 481 VDQWNAPEGFSVNVASANASQVLLATGGGHLVYLEIKDSKLVEVKHIQLEHEISCVDLNP 540
VDQWNAPEGFSVNVASANASQVLLATGGGHLVYLEIKDSKLVEVKHIQLEHEISCVDLNP
Sbjct: 481 VDQWNAPEGFSVNVASANASQVLLATGGGHLVYLEIKDSKLVEVKHIQLEHEISCVDLNP 540
Query: 541 IGENPQYSSLAAVGMWTDISVRILSLPDLELIRKENLGGEIVPRSVLLCTLEGVSYLLCA 600
IGENPQYSSLAAVGMWTDISVRILSLPDLELIRKENLGGEIVPRSVLLCTLEGVSYLLCA
Sbjct: 541 IGENPQYSSLAAVGMWTDISVRILSLPDLELIRKENLGGEIVPRSVLLCTLEGVSYLLCA 600
Query: 601 LGDGHLFSFLLNASTGELTDRKKVSLGTQPISLRTFSSKGTTHVFASSDRPTVIYSSNKK 660
LGDGHLFSFLLNASTGELTDRKKVSLGTQPISLRTFSSKGTTHVFASSDRPTVIYSSNKK
Sbjct: 601 LGDGHLFSFLLNASTGELTDRKKVSLGTQPISLRTFSSKGTTHVFASSDRPTVIYSSNKK 660
Query: 661 LLYSNVNLKEVNHMCPFNTAAIPDSLAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRIC 720
LLYSNVNLKEVNHMCPFNTAAIPDSLAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRIC
Sbjct: 661 LLYSNVNLKEVNHMCPFNTAAIPDSLAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRIC 720
Query: 721 HQEQSRTLAFCSFKHNQTSIEESETHFVRLLDHQTFEFLSIYQLDQYEHGCSIISCSFSD 780
HQEQSRTLAFCSFKHNQTSIEESETHFVRLLDHQTFEFLSIYQLDQYEHGCSIISCSFSD
Sbjct: 721 HQEQSRTLAFCSFKHNQTSIEESETHFVRLLDHQTFEFLSIYQLDQYEHGCSIISCSFSD 780
Query: 781 DNNVYYCVGTAYVLPEENEPSKGRILVFAVEDGRLQLIVEKETKGAVYSLNAFNGKLLAA 840
DNNVYYCVGTAYVLPEENEPSKGRILVFAVEDGRLQLIVEKETKGAVYSLNAFNGKLLAA
Sbjct: 781 DNNVYYCVGTAYVLPEENEPSKGRILVFAVEDGRLQLIVEKETKGAVYSLNAFNGKLLAA 840
Query: 841 INQKIQLYKWMLREDGSHELQSECGHHGHILALYTQTRGDFIVVGDLMKSISLLVYKHEE 900
INQKIQLYKWMLREDGSHELQSECGHHGHILALYTQTRGDFIVVGDLMKSISLLVYKHEE
Sbjct: 841 INQKIQLYKWMLREDGSHELQSECGHHGHILALYTQTRGDFIVVGDLMKSISLLVYKHEE 900
Query: 901 SAIEELARDYNANWMSAVEMLDDEIYIGAENNYNIFTVRKNSDAATDEERGRLEVVGEYH 960
SAIEELARDYNANWMSAVEMLDDEIYIGAENNYNIFTVRKNSDAATDEERGRLEVVGEYH
Sbjct: 901 SAIEELARDYNANWMSAVEMLDDEIYIGAENNYNIFTVRKNSDAATDEERGRLEVVGEYH 960
Query: 961 LGEFVNRLRHGSLVMRLPDSEMGQIPTVIFGTINGVIGIIASLPHEQYVFLEKLQSTLVK 1020
LGEFVNRLRHGSLVMRLPDSEMGQIPTVIFGTINGVIGIIASLPHEQYVFLEKLQSTLVK
Sbjct: 961 LGEFVNRLRHGSLVMRLPDSEMGQIPTVIFGTINGVIGIIASLPHEQYVFLEKLQSTLVK 1020
Query: 1021 FIKGVGNLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLSRNKMEEVAKGMGVPVEELS 1080
FIKGVGNLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLSRNKMEEVAKGMGVPVEELS
Sbjct: 1021 FIKGVGNLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLSRNKMEEVAKGMGVPVEELS 1080
Query: 1081 KRVEELTRLH 1090
KRVEELTRLH
Sbjct: 1081 KRVEELTRLH 1090
>AK067427
Length = 1315
Score = 2038 bits (5280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1000/1021 (97%), Positives = 1003/1021 (98%)
Query: 1 MSVWNYVVTAHKPTSVTHSCVGNFTGPNQLNLIVAKCTRIEIHLLTPQGLQPMIDVPIYG 60
MSVWNYVVTAHKPTSVTHSCVGNFTGPNQLNLIVAKCTRIEIHLLTPQGLQPMIDVPIYG
Sbjct: 1 MSVWNYVVTAHKPTSVTHSCVGNFTGPNQLNLIVAKCTRIEIHLLTPQGLQPMIDVPIYG 60
Query: 61 RIATLELFRPHNETQDFLFIATERYKFCVLQWDGEKSELLTRAMGDVSDRIGRPTDNGQI 120
RIATLELFRPHNETQDFLFIATERYKFCVLQWDGEKSELLTRAMGDVSDRIGRPTDNGQI
Sbjct: 61 RIATLELFRPHNETQDFLFIATERYKFCVLQWDGEKSELLTRAMGDVSDRIGRPTDNGQI 120
Query: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCVKPTIVVL 180
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCVKPTIVVL
Sbjct: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCVKPTIVVL 180
Query: 181 YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYC 240
YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGAGLLIPVPAPL YC
Sbjct: 181 YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGAGLLIPVPAPLGGVIIIGEETIVYC 240
Query: 241 NANSTFRAIPIKQSIIRAYGRVDPDGSRYLLGDNAGILHLLVLTHERERVTGLKIEYLGE 300
NANSTFRAIPIKQSIIRAYGRVDPDGSRYLLGDNAGILHLLVLTHERERVTGLKIEYLGE
Sbjct: 241 NANSTFRAIPIKQSIIRAYGRVDPDGSRYLLGDNAGILHLLVLTHERERVTGLKIEYLGE 300
Query: 301 TSIASSISYLDNGVVYVGSRFGDSQLVKLNLQADPNGSYVEVLERYVNLGPIVDFCVVDL 360
TSIASSISYLDNGVVYVGSRFGDSQLVKLNLQADPNGSYVEVLERYVNLGPIVDFCVVDL
Sbjct: 301 TSIASSISYLDNGVVYVGSRFGDSQLVKLNLQADPNGSYVEVLERYVNLGPIVDFCVVDL 360
Query: 361 DRQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGLWSLKSSFNDPYDMYLVV 420
DRQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGLWSLKSSFNDPYDMYLVV
Sbjct: 361 DRQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGLWSLKSSFNDPYDMYLVV 420
Query: 421 SFISETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAINDLLIQVTANSVRLVSCTSREL 480
SFISETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAINDLLIQVTANSVRLVSCTSREL
Sbjct: 421 SFISETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAINDLLIQVTANSVRLVSCTSREL 480
Query: 481 VDQWNAPEGFSVNVASANASQVLLATGGGHLVYLEIKDSKLVEVKHIQLEHEISCVDLNP 540
VDQWNAPEGFSVNVASANASQVLLATGGGHLVYLEIKDSKLVEVKHIQLEHEISCVDLNP
Sbjct: 481 VDQWNAPEGFSVNVASANASQVLLATGGGHLVYLEIKDSKLVEVKHIQLEHEISCVDLNP 540
Query: 541 IGENPQYSSLAAVGMWTDISVRILSLPDLELIRKENLGGEIVPRSVLLCTLEGVSYLLCA 600
IGENPQYSSLAAVGMWTDISVRILSLPDLELIRKENLGGEIVPRSVLLCTLEGVSYLLCA
Sbjct: 541 IGENPQYSSLAAVGMWTDISVRILSLPDLELIRKENLGGEIVPRSVLLCTLEGVSYLLCA 600
Query: 601 LGDGHLFSFLLNASTGELTDRKKVSLGTQPISLRTFSSKGTTHVFASSDRPTVIYSSNKK 660
LGDGHLFSFLLNASTGELTDRKKVSLGTQPISLRTFSSKGTTHVFASSDRPTVIYSSNKK
Sbjct: 601 LGDGHLFSFLLNASTGELTDRKKVSLGTQPISLRTFSSKGTTHVFASSDRPTVIYSSNKK 660
Query: 661 LLYSNVNLKEVNHMCPFNTAAIPDSLAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRIC 720
LLYSNVNLKEVNHMCPFNTAAIPDSLAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRIC
Sbjct: 661 LLYSNVNLKEVNHMCPFNTAAIPDSLAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRIC 720
Query: 721 HQEQSRTLAFCSFKHNQTSIEESETHFVRLLDHQTFEFLSIYQLDQYEHGCSIISCSFSD 780
HQEQSRTLAFCSFKHNQTSIEESETHFVRLLDHQTFEFLSIYQLDQYEHGCSIISCSFSD
Sbjct: 721 HQEQSRTLAFCSFKHNQTSIEESETHFVRLLDHQTFEFLSIYQLDQYEHGCSIISCSFSD 780
Query: 781 DNNVYYCVGTAYVLPEENEPSKGRILVFAVEDGRLQLIVEKETKGAVYSLNAFNGKLLAA 840
DNNVYYCVGTAYVLPEENEPSKGRILVFAVEDGRLQLIVEKETKGAVYSLNAFNGKLLAA
Sbjct: 781 DNNVYYCVGTAYVLPEENEPSKGRILVFAVEDGRLQLIVEKETKGAVYSLNAFNGKLLAA 840
Query: 841 INQKIQLYKWMLREDGSHELQSECGHHGHILALYTQTRGDFIVVGDLMKSISLLVYKHEE 900
INQKIQLYKWMLREDGSHELQSECGHHGHILALYTQTRGDFIVVGDLMKSISLLVYKHEE
Sbjct: 841 INQKIQLYKWMLREDGSHELQSECGHHGHILALYTQTRGDFIVVGDLMKSISLLVYKHEE 900
Query: 901 SAIEELARDYNANWMSAVEMLDDEIYIGAENNYNIFTVRKNSDAATDEERGRLEVVGEYH 960
SAIEELARDYNANWMSAVEMLDDEIYIGAENNYNIFTVRKNSDAATDEERGRLEVVGEYH
Sbjct: 901 SAIEELARDYNANWMSAVEMLDDEIYIGAENNYNIFTVRKNSDAATDEERGRLEVVGEYH 960
Query: 961 LGEFVNRLRHGSLVMRLPDSEMGQIPTVIFGTINGVIGIIASLPHEQYVFLEKLQSTLVK 1020
LGEFVNRLRHGSLVMRLPDSEMGQIPTVIFGTINGVIGIIASLPHEQY + +LQ +V
Sbjct: 961 LGEFVNRLRHGSLVMRLPDSEMGQIPTVIFGTINGVIGIIASLPHEQYALIHQLQQRVVI 1020
Query: 1021 F 1021
F
Sbjct: 1021 F 1021
>Os02g0137400 WD40-like domain containing protein
Length = 845
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 108/416 (25%), Positives = 190/416 (45%), Gaps = 25/416 (6%)
Query: 348 NLGPIVDFCVVDLDRQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIK-GLWSL 406
+L PI+D V +L + QV T G +LR++R G+ I+E A L +W++
Sbjct: 28 SLMPIMDMRVANLFDEETPQVFTACGRGPRSTLRILRPGLAISEMARSMLPAEPIAVWTV 87
Query: 407 KSSFNDPYDMYLVVSFISETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAINDLLIQVT 466
K + ND +D Y+VVSF + T L +++ + +EE F T +L D L+QV
Sbjct: 88 KKNINDMFDAYIVVSFANVT--LVLSIGETIEEVSDSQFLDTTHSLAVSLLGEDSLMQVH 145
Query: 467 ANSVRLVSCTSRELVDQWNAPEGFSVNVASANASQVLLATGGGHLVYLEIK-DSKLVEVK 525
N +R + R V++W P ++ +N QV++A GG L+Y E+ +L+EV+
Sbjct: 146 PNGIRHIREDGR--VNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVE 203
Query: 526 HIQLEHEISCVDLNPIGENPQYSSLAAVGMWTDISVRILSL-PD--LELIRKENLGGEIV 582
+ +++C+ + P+ E Q S AVG + D ++RILS+ PD L+ + +++
Sbjct: 204 KQDMSGDVACLAIAPVPEGRQRSRFLAVGSF-DNTIRILSVDPDDCLQPLSVQSVSS--A 260
Query: 583 PRSVLLCTLEGVS------------YLLCALGDGHLFSFLLNASTGELTDRKKVSLGTQP 630
P S++ ++ +L L +G LF ++ TG+L+D + LG +P
Sbjct: 261 PESLMFLEVQASVGGEDGADHPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRP 320
Query: 631 ISLRTFSSKGTTHVFASSDRPTVIYSSNKKLLYSNVNLKEVNHMCPFNTAAIPDSLAIAK 690
L + S RP + Y L + ++ + F++ + +
Sbjct: 321 PKLFPCIVSHRQAMLCLSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVA 380
Query: 691 EGELSIGTIDDI-QKLHIRTIPLNEQARRICHQEQSRTLAFCSFKHNQTSIEESET 745
L I TI+ + + + IPL R+ + + LA S EE E
Sbjct: 381 GDALRIFTIEHLGETFNETAIPLRYTPRKFVILPKKKYLAVIESDKGALSAEEREA 436
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 168/366 (45%), Gaps = 46/366 (12%)
Query: 748 VRLLDHQTFEFLSIYQLDQYEHGCSIISCSFSD-DNNVYYCVGTAYVL---PEENEPSKG 803
+R+LD ++ + + +L E SI + +F D ++ VGTA L P+ N S G
Sbjct: 494 IRILDPKSRDTTCLLELQDNEAAVSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNL-SAG 552
Query: 804 RILVFA-VEDGR-LQLIVEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLREDGSHELQ 861
I ++ V++GR L+L+ + + + +L F G+LLA + ++LY G +L
Sbjct: 553 FIHIYKFVDEGRSLELLHKTQVEEVPLALCQFQGRLLAGVGSVLRLYDL-----GKRKLL 607
Query: 862 SECGHHGHILALYT-QTRGDFIVVGDLMKSISLLVYKHEESAIEELARDYNANWMSAVEM 920
+C + + + T D I VGD+ +S Y+ +E+ + A D W++A
Sbjct: 608 RKCENKLFPRTIVSIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFADDSVPRWLTAANH 667
Query: 921 LDDEIYIGAENNYNIFTVRKNSDAATDE------------ERGRL-------EVVGEYHL 961
+D + GA+ NI+ R D +DE E+G+L E + ++H+
Sbjct: 668 IDFDTMAGADKFGNIYFARLPQD-LSDEIEEDPTGGKIKWEQGKLNGAPNKVEEIVQFHV 726
Query: 962 GEFVNRLRHGSLVMRLPDSEMGQIPTVIFGTINGVIG-IIASLPHEQYVFLEKLQSTLVK 1020
G+ V L+ SL+ G +I+GT+ G +G ++A E F L+ L +
Sbjct: 727 GDVVTCLQKASLI-------PGGGECLIYGTVMGSVGALLAFTSREDVDFFSHLEMHLRQ 779
Query: 1021 FIKGVGNLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLSRNKMEEVAKGMGVPVEELS 1080
+ H +RS + ++ +DGDL E F L + ++A + E+
Sbjct: 780 EHPPLCGRDHMAYRSAY-----FPVKDVIDGDLCEQFPSLPADMQRKIADELDRTPGEIL 834
Query: 1081 KRVEEL 1086
K++E++
Sbjct: 835 KKLEDI 840
>Os04g0252200 CPSF A subunit, C-terminal domain containing protein
Length = 432
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 17/307 (5%)
Query: 779 SDDNNVYYCVGTAYVLPEENEPSKGRILVFAV--EDGRLQLIVE---KETKGAVYSLNAF 833
+ +N +GTAYVL E+ ++GR+L+F+ + L+ E KE+KGAV ++ +
Sbjct: 113 TKENETLLAIGTAYVLGED-VAARGRVLLFSFTKSENSQNLVTEVYSKESKGAVSAVASL 171
Query: 834 NGKLLAAINQKIQLYKWMLREDGSHELQSECGHHGHILALYTQTRGDFIVVGDLMKSISL 893
G LL A KI L KW EL + + + + +F++ GD+ KSI
Sbjct: 172 QGHLLIASGPKITLNKWT-----GAELTAVAFYDAPLHVVSLNIVKNFVLFGDIHKSIYF 226
Query: 894 LVYKHEESAIEELARDYNANWMSAVEMLDDE---IYIGAENNYNIFTVRKNSDAATDEER 950
L +K + S + LA+D+ + A E L D + ++++ N+ +
Sbjct: 227 LSWKEQGSQLSLLAKDFGSLDCFATEFLIDGSTLSLVASDSDKNVQIFYYAPKMVESWKG 286
Query: 951 GRLEVVGEYHLGEFVNR-LRHGSLVMRLPDSEMGQIPTVIFGTINGVIGIIASLPHEQYV 1009
+L E+H+G + + LR L + SE ++FG ++G IG IA + +
Sbjct: 287 QKLLSRAEFHVGAHITKFLRLQMLPTQGLSSEKTNRFALLFGNLDGGIGCIAPIDELTFR 346
Query: 1010 FLEKLQSTLVKFIKGVGNLSHEQWRSFHNDKKTSE--ARNFLDGDLIESFLDLSRNKMEE 1067
L+ LQ LV + V L+ +R FH++ K N +D +L+ + LS ++ +
Sbjct: 347 RLQSLQRKLVDAVPHVCGLNPRSFRQFHSNGKGHRPGPDNIIDFELLAHYEMLSLDEQLD 406
Query: 1068 VAKGMGV 1074
VA+ +G
Sbjct: 407 VAQQIGT 413
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 35,424,736
Number of extensions: 1491994
Number of successful extensions: 3340
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3330
Number of HSP's successfully gapped: 5
Length of query: 1090
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 979
Effective length of database: 11,240,047
Effective search space: 11004006013
Effective search space used: 11004006013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)