Os02g0137400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os02g0137400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.75 | 0.214 | 11.8 | 1.21 | 0.368 | 0.56 | 0.676 | -0.338 | 0.217 | 16.8 | 78.52 | 1198 | -- | -- |
| 20.87 | 0.213 | 11.8 | 1.18 | 0.367 | 0.549 | 0.634 | -- | 0.212 | 16.7 | 78.53 | 1210 | -- | -- |
| 21.77 | 0.217 | 11.8 | 1.19 | 0.377 | 0.552 | -- | -0.163 | 0.215 | 16.2 | 78 | 1262 | -- | -- |
| 21.79 | 0.217 | 11.8 | 1.18 | 0.372 | 0.553 | -- | -- | 0.214 | 16.2 | 78.24 | 1271 | -- | -- |
| 28.8 | 0.25 | 11.7 | 1.19 | -- | 0.716 | -- | -0.195 | 0.217 | -- | 78 | 1247 | -- | -- |
| 24.89 | 0.234 | 11.8 | 1.15 | 0.43 | -- | 0.571 | -- | 0.185 | 16 | -- | -- | -- | -- |
| 25.79 | 0.238 | 11.8 | 1.15 | 0.432 | -- | -- | -- | 0.188 | 15.8 | -- | -- | -- | -- |
| 28.83 | 0.25 | 11.7 | 1.18 | -- | 0.705 | -- | -- | 0.213 | -- | 78.05 | 1247 | -- | -- |
| 55.98 | 0.348 | 11.8 | -- | 0.341 | 0.514 | -- | -- | 0.0543 | 16.3 | 83 | 1257 | -- | -- |
| 36.07 | 0.281 | 11.8 | 1.14 | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
| 60.83 | 0.365 | 11.8 | -- | 0.409 | -- | -- | -- | 0.0593 | 15.9 | -- | -- | -- | -- |
| 61.46 | 0.365 | 11.8 | -- | -- | 0.68 | -- | -- | 0.0947 | -- | 85 | 1220 | -- | -- |
| 70.05 | 0.391 | 11.8 | -- | -- | -- | -- | -- | 0.0502 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.81 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 16 | 20.19 | humidity | 90 | 720 | > th | dose dependent | rect. | 22 | 2 |
| 19 | 20.23 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 12 |
| 33 | 20.39 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 7 |
| 40 | 20.45 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 58 | 20.52 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 76 | 20.66 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 80 | 20.67 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 3 |
| 94 | 20.72 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 14 |
| 95 | 20.72 | humidity | 70 | 720 | > th | dose dependent | sin | 13 | NA |
| 103 | 20.74 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 5 |
| 110 | 20.77 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 8 |
| 131 | 20.82 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 132 | 20.82 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 10 |
| 143 | 20.84 | humidity | 80 | 720 | > th | dose independent | sin | 13 | NA |
| 144 | 20.84 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 14 |
| 157 | 20.86 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 160 | 20.87 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 164 | 20.87 | humidity | 70 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 199 | 20.92 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 206 | 20.95 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 4 |
| 210 | 20.95 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 20 |
| 216 | 20.96 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 235 | 20.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 246 | 20.99 | humidity | 90 | 720 | < th | dose dependent | sin | 12 | NA |
| 303 | 21.06 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 309 | 21.07 | humidity | 80 | 1440 | > th | dose independent | rect. | 21 | 20 |
| 313 | 21.08 | humidity | 80 | 720 | < th | dose independent | sin | 14 | NA |
| 467 | 21.24 | humidity | 80 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 513 | 21.29 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 540 | 21.31 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 560 | 21.32 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 662 | 21.39 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 665 | 21.39 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 676 | 21.40 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 21 |
| 754 | 21.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 762 | 21.45 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 14 |
| 834 | 21.49 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 850 | 21.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 882 | 21.51 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 890 | 21.51 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 920 | 21.52 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 923 | 21.52 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 937 | 21.53 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 954 | 21.53 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 992 | 21.54 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 22 |