BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0137400 Os02g0137400|AK068480
(845 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0137400 WD40-like domain containing protein 1753 0.0
AK108120 249 6e-66
Os05g0592400 UV-damaged DNA binding protein 119 1e-26
AK067427 117 3e-26
>Os02g0137400 WD40-like domain containing protein
Length = 845
Score = 1753 bits (4541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 845/845 (100%), Positives = 845/845 (100%)
Query: 1 METDEGFQPVFFQPRALKNLYRIDEIESLMPIMDMRVANLFDEETPQVFTACGRGPRSTL 60
METDEGFQPVFFQPRALKNLYRIDEIESLMPIMDMRVANLFDEETPQVFTACGRGPRSTL
Sbjct: 1 METDEGFQPVFFQPRALKNLYRIDEIESLMPIMDMRVANLFDEETPQVFTACGRGPRSTL 60
Query: 61 RILRPGLAISEMARSMLPAEPIAVWTVKKNINDMFDAYIVVSFANVTLVLSIGETIEEVS 120
RILRPGLAISEMARSMLPAEPIAVWTVKKNINDMFDAYIVVSFANVTLVLSIGETIEEVS
Sbjct: 61 RILRPGLAISEMARSMLPAEPIAVWTVKKNINDMFDAYIVVSFANVTLVLSIGETIEEVS 120
Query: 121 DSQFLDTTHSLAVSLLGEDSLMQVHPNGIRHIREDGRVNEWRTPGKKTITKVGSNRLQVV 180
DSQFLDTTHSLAVSLLGEDSLMQVHPNGIRHIREDGRVNEWRTPGKKTITKVGSNRLQVV
Sbjct: 121 DSQFLDTTHSLAVSLLGEDSLMQVHPNGIRHIREDGRVNEWRTPGKKTITKVGSNRLQVV 180
Query: 181 IALSGGELIYFEMDMTGQLMEVEKQDMSGDVACLAIAPVPEGRQRSRFLAVGSFDNTIRI 240
IALSGGELIYFEMDMTGQLMEVEKQDMSGDVACLAIAPVPEGRQRSRFLAVGSFDNTIRI
Sbjct: 181 IALSGGELIYFEMDMTGQLMEVEKQDMSGDVACLAIAPVPEGRQRSRFLAVGSFDNTIRI 240
Query: 241 LSVDPDDCLQPLSVQSVSSAPESLMFLEVQASVGGEDGADHPANLFLNAGLQNGVLFRTN 300
LSVDPDDCLQPLSVQSVSSAPESLMFLEVQASVGGEDGADHPANLFLNAGLQNGVLFRTN
Sbjct: 241 LSVDPDDCLQPLSVQSVSSAPESLMFLEVQASVGGEDGADHPANLFLNAGLQNGVLFRTN 300
Query: 301 VDMVTGQLSDTRSRFLGLRPPKLFPCIVSHRQAMLCLSSRPWLGYIHQGHFLLTPLSCDT 360
VDMVTGQLSDTRSRFLGLRPPKLFPCIVSHRQAMLCLSSRPWLGYIHQGHFLLTPLSCDT
Sbjct: 301 VDMVTGQLSDTRSRFLGLRPPKLFPCIVSHRQAMLCLSSRPWLGYIHQGHFLLTPLSCDT 360
Query: 361 LESAASFSSDQCSEGVVAVAGDALRIFTIEHLGETFNETAIPLRYTPRKFVILPKKKYLA 420
LESAASFSSDQCSEGVVAVAGDALRIFTIEHLGETFNETAIPLRYTPRKFVILPKKKYLA
Sbjct: 361 LESAASFSSDQCSEGVVAVAGDALRIFTIEHLGETFNETAIPLRYTPRKFVILPKKKYLA 420
Query: 421 VIESDKGALSAEEREAAKKECLEAAGVTENGNANNGDQMENGDGQEDGAEDRNTLPDEQY 480
VIESDKGALSAEEREAAKKECLEAAGVTENGNANNGDQMENGDGQEDGAEDRNTLPDEQY
Sbjct: 421 VIESDKGALSAEEREAAKKECLEAAGVTENGNANNGDQMENGDGQEDGAEDRNTLPDEQY 480
Query: 481 GYPKAESERWVSCIRILDPKSRDTTCLLELQDNEAAVSICTVNFHDKEHGTLLAVGTAKG 540
GYPKAESERWVSCIRILDPKSRDTTCLLELQDNEAAVSICTVNFHDKEHGTLLAVGTAKG
Sbjct: 481 GYPKAESERWVSCIRILDPKSRDTTCLLELQDNEAAVSICTVNFHDKEHGTLLAVGTAKG 540
Query: 541 LQFWPKRNLSAGFIHIYKFVDEGRSLELLHKTQVEEVPLALCQFQGRLLAGVGSVLRLYD 600
LQFWPKRNLSAGFIHIYKFVDEGRSLELLHKTQVEEVPLALCQFQGRLLAGVGSVLRLYD
Sbjct: 541 LQFWPKRNLSAGFIHIYKFVDEGRSLELLHKTQVEEVPLALCQFQGRLLAGVGSVLRLYD 600
Query: 601 LGKRKLLRKCENKLFPRTIVSIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFADDSVPR 660
LGKRKLLRKCENKLFPRTIVSIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFADDSVPR
Sbjct: 601 LGKRKLLRKCENKLFPRTIVSIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFADDSVPR 660
Query: 661 WLTAANHIDFDTMAGADKFGNIYFARLPQDLSDEIEEDPTGGKIKWEQGKLNGAPNKVEE 720
WLTAANHIDFDTMAGADKFGNIYFARLPQDLSDEIEEDPTGGKIKWEQGKLNGAPNKVEE
Sbjct: 661 WLTAANHIDFDTMAGADKFGNIYFARLPQDLSDEIEEDPTGGKIKWEQGKLNGAPNKVEE 720
Query: 721 IVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSVGALLAFTSREDVDFFSHLEMHLRQE 780
IVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSVGALLAFTSREDVDFFSHLEMHLRQE
Sbjct: 721 IVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSVGALLAFTSREDVDFFSHLEMHLRQE 780
Query: 781 HPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPSLPADMQRKIADELDRTPGEILKKLEDI 840
HPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPSLPADMQRKIADELDRTPGEILKKLEDI
Sbjct: 781 HPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPSLPADMQRKIADELDRTPGEILKKLEDI 840
Query: 841 RNKII 845
RNKII
Sbjct: 841 RNKII 845
>AK108120
Length = 287
Score = 249 bits (636), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 122/284 (42%), Positives = 177/284 (62%)
Query: 561 DEGRSLELLHKTQVEEVPLALCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFPRTIV 620
D G LE LHKT+ EE A+ F+GRL G+G+ L +YD+G + ++RK P IV
Sbjct: 2 DNGTRLEFLHKTRFEEPIHAILPFKGRLAVGIGAELFIYDIGTKAMMRKSRGGRVPNKIV 61
Query: 621 SIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFADDSVPRWLTAANHIDFDTMAGADKFG 680
SI+ DR+ GD+ ES Y ++ N++ FADD++ RW TA+ +D++T G DKFG
Sbjct: 62 SINAAGDRLVCGDVAESVTYIVFKPKANRMIPFADDTIQRWTTASAMVDYETTVGGDKFG 121
Query: 681 NIYFARLPQDLSDEIEEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTCLQKASLIP 740
N++ R P S+E +E+ G I E+ L GAP +++ F V DV T +++ L+
Sbjct: 122 NLWVLRCPPQASEEADEEGMNGFIVNERPYLGGAPYRLDCRAHFFVNDVPTSIKRTPLVA 181
Query: 741 GGGECLIYGTVMGSVGALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVK 800
GG + + + + G++G L+ F SREDV FF LE LR E PPL GRDH+ YR Y PVK
Sbjct: 182 GGADVVFWSGISGTLGILVPFVSREDVVFFQSLEQALRTEEPPLTGRDHLMYRGYYQPVK 241
Query: 801 DVIDGDLCEQFPSLPADMQRKIADELDRTPGEILKKLEDIRNKI 844
VIDGDLCE+F +L D + +IA EL+R P E+ KK+ ++R ++
Sbjct: 242 GVIDGDLCERFMALSYDGKARIAAELEREPKEVEKKVVEMRTRV 285
>Os05g0592400 UV-damaged DNA binding protein
Length = 1090
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/416 (25%), Positives = 190/416 (45%), Gaps = 25/416 (6%)
Query: 28 SLMPIMDMRVANLFDEETPQVFTACGRGPRSTLRILRPGLAISEMARSMLPAEPIAVWTV 87
+L PI+D V +L + QV T G +LR++R G+ I+E A L +W++
Sbjct: 348 NLGPIVDFCVVDLDRQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIK-GLWSL 406
Query: 88 KKNINDMFDAYIVVSFANVT--LVLSIGETIEEVSDSQFLDTTHSLAVSLLGEDSLMQVH 145
K + ND +D Y+VVSF + T L +++ + +EE F T +L D L+QV
Sbjct: 407 KSSFNDPYDMYLVVSFISETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAINDLLIQVT 466
Query: 146 PNGIRHIREDGR--VNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVE 203
N +R + R V++W P ++ +N QV++A GG L+Y E+ +L+EV+
Sbjct: 467 ANSVRLVSCTSRELVDQWNAPEGFSVNVASANASQVLLATGGGHLVYLEIK-DSKLVEVK 525
Query: 204 KQDMSGDVACLAIAPVPEGRQRSRFLAVGSF-DNTIRILSVDPDDCLQPLSVQSVSS--A 260
+ +++C+ + P+ E Q S AVG + D ++RILS+ PD L+ + +++
Sbjct: 526 HIQLEHEISCVDLNPIGENPQYSSLAAVGMWTDISVRILSL-PD--LELIRKENLGGEIV 582
Query: 261 PESLMFLEVQASVGGEDGADHPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRP 320
P S++ ++ +L L +G LF ++ TG+L+D + LG +P
Sbjct: 583 PRSVLLCTLEGVS------------YLLCALGDGHLFSFLLNASTGELTDRKKVSLGTQP 630
Query: 321 PKLFPCIVSHRQAMLCLSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVA 380
L + S RP + Y L + ++ + F++ + +
Sbjct: 631 ISLRTFSSKGTTHVFASSDRPTVIYSSNKKLLYSNVNLKEVNHMCPFNTAAIPDSLAIAK 690
Query: 381 GDALRIFTIEHLGETFNETAIPLRYTPRKFVILPKKKYLAVIESDKGALSAEEREA 436
L I TI+ + + + IPL R+ + + LA S EE E
Sbjct: 691 EGELSIGTIDDI-QKLHIRTIPLNEQARRICHQEQSRTLAFCSFKHNQTSIEESET 745
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 168/366 (45%), Gaps = 46/366 (12%)
Query: 494 IRILDPKSRDTTCLLELQDNEAAVSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNL-SAG 552
+R+LD ++ + + +L E SI + +F D ++ VGTA L P+ N S G
Sbjct: 748 VRLLDHQTFEFLSIYQLDQYEHGCSIISCSFSD-DNNVYYCVGTAYVL---PEENEPSKG 803
Query: 553 FIHIYKFVDEGRSLELLHKTQVEEVPLALCQFQGRLLAGVGSVLRLYDL-----GKRKLL 607
I ++ V++GR L+L+ + + + +L F G+LLA + ++LY G +L
Sbjct: 804 RILVFA-VEDGR-LQLIVEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLREDGSHELQ 861
Query: 608 RKCENKLFPRTIVSIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFADDSVPRWLTAANH 667
+C + + + T D I VGD+ +S Y+ +E+ + A D W++A
Sbjct: 862 SECGHHGHILALYT-QTRGDFIVVGDLMKSISLLVYKHEESAIEELARDYNANWMSAVEM 920
Query: 668 IDFDTMAGADKFGNIYFARLPQD-LSDEIEEDPTGGKIKWEQGKLNGAPNKVEEIVQFHV 726
+D + GA+ NI+ R D +DE E+G+L E + ++H+
Sbjct: 921 LDDEIYIGAENNYNIFTVRKNSDAATDE------------ERGRL-------EVVGEYHL 961
Query: 727 GDVVTCLQKASLI-------PGGGECLIYGTVMGSVGALLAFTSREDVDFFSHLEMHLRQ 779
G+ V L+ SL+ G +I+GT+ G +G ++A E F L+ L +
Sbjct: 962 GEFVNRLRHGSLVMRLPDSEMGQIPTVIFGTINGVIG-IIASLPHEQYVFLEKLQSTLVK 1020
Query: 780 EHPPLCGRDHMAYRSAY-----FPVKDVIDGDLCEQFPSLPADMQRKIADELDRTPGEIL 834
+ H +RS + ++ +DGDL E F L + ++A + E+
Sbjct: 1021 FIKGVGNLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLSRNKMEEVAKGMGVPVEELS 1080
Query: 835 KKLEDI 840
K++E++
Sbjct: 1081 KRVEEL 1086
>AK067427
Length = 1315
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 108/416 (25%), Positives = 190/416 (45%), Gaps = 25/416 (6%)
Query: 28 SLMPIMDMRVANLFDEETPQVFTACGRGPRSTLRILRPGLAISEMARSMLPAEPIAVWTV 87
+L PI+D V +L + QV T G +LR++R G+ I+E A L +W++
Sbjct: 348 NLGPIVDFCVVDLDRQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIK-GLWSL 406
Query: 88 KKNINDMFDAYIVVSFANVT--LVLSIGETIEEVSDSQFLDTTHSLAVSLLGEDSLMQVH 145
K + ND +D Y+VVSF + T L +++ + +EE F T +L D L+QV
Sbjct: 407 KSSFNDPYDMYLVVSFISETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAINDLLIQVT 466
Query: 146 PNGIRHIREDGR--VNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVE 203
N +R + R V++W P ++ +N QV++A GG L+Y E+ +L+EV+
Sbjct: 467 ANSVRLVSCTSRELVDQWNAPEGFSVNVASANASQVLLATGGGHLVYLEIK-DSKLVEVK 525
Query: 204 KQDMSGDVACLAIAPVPEGRQRSRFLAVGSF-DNTIRILSVDPDDCLQPLSVQSVSS--A 260
+ +++C+ + P+ E Q S AVG + D ++RILS+ PD L+ + +++
Sbjct: 526 HIQLEHEISCVDLNPIGENPQYSSLAAVGMWTDISVRILSL-PD--LELIRKENLGGEIV 582
Query: 261 PESLMFLEVQASVGGEDGADHPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRP 320
P S++ ++ +L L +G LF ++ TG+L+D + LG +P
Sbjct: 583 PRSVLLCTLEGVS------------YLLCALGDGHLFSFLLNASTGELTDRKKVSLGTQP 630
Query: 321 PKLFPCIVSHRQAMLCLSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVA 380
L + S RP + Y L + ++ + F++ + +
Sbjct: 631 ISLRTFSSKGTTHVFASSDRPTVIYSSNKKLLYSNVNLKEVNHMCPFNTAAIPDSLAIAK 690
Query: 381 GDALRIFTIEHLGETFNETAIPLRYTPRKFVILPKKKYLAVIESDKGALSAEEREA 436
L I TI+ + + + IPL R+ + + LA S EE E
Sbjct: 691 EGELSIGTIDDI-QKLHIRTIPLNEQARRICHQEQSRTLAFCSFKHNQTSIEESET 745
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 132/282 (46%), Gaps = 40/282 (14%)
Query: 494 IRILDPKSRDTTCLLELQDNEAAVSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNL-SAG 552
+R+LD ++ + + +L E SI + +F D ++ VGTA L P+ N S G
Sbjct: 748 VRLLDHQTFEFLSIYQLDQYEHGCSIISCSFSD-DNNVYYCVGTAYVL---PEENEPSKG 803
Query: 553 FIHIYKFVDEGRSLELLHKTQVEEVPLALCQFQGRLLAGVGSVLRLYDL-----GKRKLL 607
I ++ V++GR L+L+ + + + +L F G+LLA + ++LY G +L
Sbjct: 804 RILVFA-VEDGR-LQLIVEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLREDGSHELQ 861
Query: 608 RKCENKLFPRTIVSIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFADDSVPRWLTAANH 667
+C + + + T D I VGD+ +S Y+ +E+ + A D W++A
Sbjct: 862 SECGHHGHILALYT-QTRGDFIVVGDLMKSISLLVYKHEESAIEELARDYNANWMSAVEM 920
Query: 668 IDFDTMAGADKFGNIYFARLPQD-LSDEIEEDPTGGKIKWEQGKLNGAPNKVEEIVQFHV 726
+D + GA+ NI+ R D +DE E+G+L E + ++H+
Sbjct: 921 LDDEIYIGAENNYNIFTVRKNSDAATDE------------ERGRL-------EVVGEYHL 961
Query: 727 GDVVTCLQKASLI-------PGGGECLIYGTVMGSVGALLAF 761
G+ V L+ SL+ G +I+GT+ G +G + +
Sbjct: 962 GEFVNRLRHGSLVMRLPDSEMGQIPTVIFGTINGVIGIIASL 1003
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,293,917
Number of extensions: 1345924
Number of successful extensions: 3339
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3326
Number of HSP's successfully gapped: 6
Length of query: 845
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 736
Effective length of database: 11,344,475
Effective search space: 8349533600
Effective search space used: 8349533600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)