Os05g0592400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UV-damaged DNA binding protein.
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Os05g0592400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UV-damaged DNA binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.35 | 0.196 | 12.1 | 0.671 | 0.203 | 0.694 | 0.236 | 0.915 | 0.262 | 17.2 | 20.4 | 1450 | -- | -- |
| 18.96 | 0.203 | 12.1 | 0.51 | 0.177 | 0.494 | 0.175 | -- | 0.223 | 16.5 | 21.3 | 2190 | -- | -- |
| 17.42 | 0.194 | 12.1 | 0.677 | 0.207 | 0.683 | -- | 0.899 | 0.262 | 17 | 20.5 | 1417 | -- | -- |
| 18.98 | 0.203 | 12.1 | 0.499 | 0.202 | 0.511 | -- | -- | 0.205 | 16.5 | 21.3 | 2310 | -- | -- |
| 19.5 | 0.206 | 12.1 | 0.665 | -- | 0.681 | -- | 0.888 | 0.259 | -- | 20.6 | 1612 | -- | -- |
| 25.8 | 0.238 | 12.1 | 0.746 | 0.192 | -- | 0.308 | -- | 0.354 | 17.5 | -- | -- | -- | -- |
| 26.02 | 0.239 | 12.1 | 0.745 | 0.194 | -- | -- | -- | 0.356 | 17.3 | -- | -- | -- | -- |
| 20.92 | 0.213 | 12.1 | 0.498 | -- | 0.534 | -- | -- | 0.208 | -- | 21 | 1895 | -- | -- |
| 23.21 | 0.224 | 12.1 | -- | 0.151 | 0.719 | -- | -- | 0.122 | 15.8 | 20 | 7980 | -- | -- |
| 27.99 | 0.247 | 12.1 | 0.739 | -- | -- | -- | -- | 0.351 | -- | -- | -- | -- | -- |
| 40.66 | 0.298 | 12.1 | -- | 0.182 | -- | -- | -- | 0.273 | 17.5 | -- | -- | -- | -- |
| 24.87 | 0.232 | 12.1 | -- | -- | 0.757 | -- | -- | 0.096 | -- | 20.06 | 7933 | -- | -- |
| 42.38 | 0.304 | 12.1 | -- | -- | -- | -- | -- | 0.269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 14 | 17.52 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 22 | 17.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 14 |
| 25 | 17.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 26 | 17.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 29 | 17.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 30 | 17.70 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |
| 31 | 17.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 11 |
| 35 | 17.70 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 39 | 17.71 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 77 | 17.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 80 | 17.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 81 | 17.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 83 | 17.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 98 | 17.82 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 120 | 17.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 142 | 17.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 196 | 17.90 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 216 | 17.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 277 | 17.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 294 | 17.99 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 297 | 18.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 300 | 18.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 306 | 18.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 349 | 18.03 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 368 | 18.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 385 | 18.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 388 | 18.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 398 | 18.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 411 | 18.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 413 | 18.06 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 481 | 18.12 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 483 | 18.12 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 496 | 18.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 500 | 18.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 580 | 18.20 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 609 | 18.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 647 | 18.24 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 658 | 18.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 709 | 18.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 714 | 18.28 | temperature | 15 | 90 | > th | dose dependent | sin | 5 | NA |
| 814 | 18.33 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 895 | 18.39 | temperature | 25 | 720 | < th | dose dependent | sin | 23 | NA |
| 998 | 18.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 18 |