Os04g0252200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CPSF A subunit, C-terminal domain containing protein.
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Os04g0252200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CPSF A subunit, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.46 | 0.255 | 10.1 | 0.00967 | 0.327 | -0.779 | 0.0347 | 2.38 | 0.246 | 2.71 | 27.2 | 729 | -- | -- |
| 30.37 | 0.257 | 10.1 | -0.25 | 0.389 | -0.501 | 0.129 | -- | 0.206 | 2.98 | 26.47 | 762 | -- | -- |
| 29.45 | 0.253 | 10.1 | 0.021 | 0.327 | -0.8 | -- | 2.57 | 0.242 | 2.76 | 27.41 | 728 | -- | -- |
| 30.23 | 0.256 | 10.1 | -0.257 | 0.343 | -0.538 | -- | -- | 0.214 | 2.8 | 26.26 | 690 | -- | -- |
| 32.15 | 0.264 | 10.1 | 0.105 | -- | -0.897 | -- | 2.16 | 0.342 | -- | 25.25 | 400 | -- | -- |
| 35.71 | 0.28 | 10.2 | -0.392 | 0.447 | -- | 0.00107 | -- | 0.195 | 4.48 | -- | -- | -- | -- |
| 35.71 | 0.28 | 10.2 | -0.392 | 0.447 | -- | -- | -- | 0.195 | 4.48 | -- | -- | -- | -- |
| 31.74 | 0.262 | 10.1 | -0.265 | -- | -0.728 | -- | -- | 0.254 | -- | 25 | 252 | -- | -- |
| 32.3 | 0.265 | 10.1 | -- | 0.325 | -0.594 | -- | -- | 0.241 | 2.59 | 26.24 | 711 | -- | -- |
| 46.41 | 0.318 | 10.2 | -0.374 | -- | -- | -- | -- | 0.207 | -- | -- | -- | -- | -- |
| 39.75 | 0.295 | 10.1 | -- | 0.44 | -- | -- | -- | 0.239 | 4.5 | -- | -- | -- | -- |
| 33.55 | 0.27 | 10.1 | -- | -- | -0.766 | -- | -- | 0.29 | -- | 24.88 | 256 | -- | -- |
| 50.1 | 0.33 | 10.1 | -- | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.62 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 19 |
| 5 | 27.69 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 6 | 27.70 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 8 | 27.71 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 19 | 27.82 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 1 | NA |
| 20 | 27.82 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 15 |
| 21 | 27.83 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 13 |
| 26 | 27.85 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 27 | 27.85 | wind | 3.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 30 | 27.86 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 32 | 27.86 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 37 | 27.87 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 39 | 27.87 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 58 | 27.91 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 65 | 27.93 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 81 | 27.95 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 83 | 27.96 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 84 | 27.96 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 13 |
| 90 | 27.96 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 95 | 27.97 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 15 |
| 109 | 27.98 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 21 |
| 119 | 28.00 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 120 | 28.00 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 15 |
| 137 | 28.02 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 138 | 28.02 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 20 |
| 140 | 28.02 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 22 |
| 141 | 28.02 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 22 |
| 144 | 28.02 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 19 |
| 153 | 28.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 172 | 28.04 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 183 | 28.05 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 15 | 13 |
| 191 | 28.06 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 197 | 28.06 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 203 | 28.07 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 211 | 28.07 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 222 | 28.08 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 235 | 28.09 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 236 | 28.09 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 247 | 28.10 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 261 | 28.11 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 268 | 28.11 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 9 |
| 282 | 28.12 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 19 |
| 289 | 28.13 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 303 | 28.13 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 308 | 28.14 | humidity | 90.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 337 | 28.16 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 363 | 28.18 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 378 | 28.19 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 402 | 28.21 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 403 | 28.21 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 408 | 28.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 3 |
| 415 | 28.22 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 427 | 28.22 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 3 |
| 433 | 28.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 456 | 28.25 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 496 | 28.28 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 499 | 28.29 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 521 | 28.31 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 527 | 28.31 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 534 | 28.32 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 553 | 28.34 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 561 | 28.34 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 568 | 28.34 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 570 | 28.35 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 575 | 28.35 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 585 | 28.37 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 588 | 28.37 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 592 | 28.37 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 17 | 15 |
| 593 | 28.38 | humidity | 90.0 | 14400 | > th | dose independent | sin | 2 | NA |
| 595 | 28.38 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 598 | 28.38 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 21 |
| 608 | 28.39 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 640 | 28.41 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 5 |
| 655 | 28.43 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 683 | 28.45 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 22 |
| 731 | 28.48 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 743 | 28.49 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 773 | 28.51 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 9 |
| 777 | 28.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 793 | 28.52 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 12 |
| 798 | 28.52 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 21 |
| 847 | 28.55 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 852 | 28.56 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 866 | 28.57 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 884 | 28.58 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 890 | 28.59 | humidity | 90.0 | 14400 | < th | dose independent | no | NA | NA |
| 900 | 28.59 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 921 | 28.60 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 922 | 28.60 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 925 | 28.61 | wind | 3.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 950 | 28.62 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 953 | 28.62 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 969 | 28.62 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 994 | 28.64 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 24 | 1 |