BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0252200 Os04g0252200|AK120441
(432 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G51660.1 | chr5:20980250-20989268 FORWARD LENGTH=1443 598 e-171
AT4G05420.1 | chr4:2746288-2752663 FORWARD LENGTH=1089 93 3e-19
AT4G21100.1 | chr4:11258916-11265309 REVERSE LENGTH=1089 90 3e-18
>AT5G51660.1 | chr5:20980250-20989268 FORWARD LENGTH=1443
Length = 1442
Score = 598 bits (1541), Expect = e-171, Method: Compositional matrix adjust.
Identities = 289/400 (72%), Positives = 341/400 (85%), Gaps = 5/400 (1%)
Query: 35 RPLNQVLSSMADQESVHHMDNDVTSTDALHKTYTVDEFEVRILELEKPGGHWETKSTIPM 94
+PLNQVLSS+ DQE+ +DN S+D L +TYTV+EFE++ILE E+ GG WETK+ IPM
Sbjct: 1046 KPLNQVLSSLVDQEAGQQLDNHNMSSDDLQRTYTVEEFEIQILEPERSGGPWETKAKIPM 1105
Query: 95 QLFENALTVRIVTLHNTTTKENETLLAIGTAYVLGEDVAARGRVLLFSFTKS-ENSQNLV 153
Q E+ALTVR+VTL N +T ENETLLA+GTAYV GEDVAARGRVLLFSF K+ +NSQN+V
Sbjct: 1106 QTSEHALTVRVVTLLNASTGENETLLAVGTAYVQGEDVAARGRVLLFSFGKNGDNSQNVV 1165
Query: 154 TEVYSKESKGAVSAVASLQGHLLIASGPKITLNKWTGAELTAVAFYDAP-LHVVSLNIVK 212
TEVYS+E KGA+SAVAS+QGHLLI+SGPKI L+KW G EL VAF+DAP L+VVS+N+VK
Sbjct: 1166 TEVYSRELKGAISAVASIQGHLLISSGPKIILHKWNGTELNGVAFFDAPPLYVVSMNVVK 1225
Query: 213 NFVLFGDIHKSIYFLSWKEQGSQLSLLAKDFGSLDCFATEFLIDGSTLSLVASDSDKNVQ 272
+F+L GD+HKSIYFLSWKEQGSQLSLLAKDF SLDCFATEFLIDGSTLSL SD KN+Q
Sbjct: 1226 SFILLGDVHKSIYFLSWKEQGSQLSLLAKDFESLDCFATEFLIDGSTLSLAVSDEQKNIQ 1285
Query: 273 IFYYAPKMVESWKGQKLLSRAEFHVGAHITKFLRLQMLPTQGLSSEKTNRFALLFGNLDG 332
+FYYAPKM+ESWKG KLLSRAEFHVGAH++KFLRLQM+ + ++K NRFALLFG LDG
Sbjct: 1286 VFYYAPKMIESWKGLKLLSRAEFHVGAHVSKFLRLQMVSS---GADKINRFALLFGTLDG 1342
Query: 333 GIGCIAPIDELTFRRLQSLQRKLVDAVPHVCGLNPRSFRQFHSNGKGHRPGPDNIIDFEL 392
GCIAP+DE+TFRRLQSLQ+KLVDAVPHV GLNP +FRQF S+GK R GPD+I+D EL
Sbjct: 1343 SFGCIAPLDEVTFRRLQSLQKKLVDAVPHVAGLNPLAFRQFRSSGKARRSGPDSIVDCEL 1402
Query: 393 LAHYEMLSLDEQLDVAQQIGTTRSQILSNFSDISLGTSFL 432
L HYEML L+EQL++A QIGTTR IL + D+S+GTSFL
Sbjct: 1403 LCHYEMLPLEEQLELAHQIGTTRYSILKDLVDLSVGTSFL 1442
>AT4G05420.1 | chr4:2746288-2752663 FORWARD LENGTH=1089
Length = 1088
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 159/347 (45%), Gaps = 21/347 (6%)
Query: 86 WETKSTIPMQLFENALTVRIVTLHNTTTKENETLLAIGTAYVLGED-VAARGRVLLFSFT 144
+E ST P+ FE ++ L + T++ +GTAYVL E+ +GR+L+F
Sbjct: 754 FEFMSTYPLDSFEYGCSI----LSCSFTEDKNVYYCVGTAYVLPEENEPTKGRILVF--I 807
Query: 145 KSENSQNLVTEVYSKESKGAVSAVASLQGHLLIASGPKITLNKWT-----GAELTAVAFY 199
+ L+ E KE+KGAV ++ + G LL A KI L KW EL + +
Sbjct: 808 VEDGRLQLIAE---KETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGH 864
Query: 200 DAPLHVVSLNIVKNFVLFGDIHKSIYFLSWKEQGSQLSLLAKDFGSLDCFATEFLIDGST 259
+ + + +F++ GD+ KSI L +K + + A+D+ + A E L D
Sbjct: 865 HGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEILDDDIY 924
Query: 260 LSLVASDSDKNVQIFYYAPKMVESWKGQKLLSRAEFHVGAHITKFLRLQMLPTQGLSSEK 319
L ++++ N+ + + +L E+H+G + +F R L + SE
Sbjct: 925 L---GAENNFNLLTVKKNSEGATDEERGRLEVVGEYHLGEFVNRF-RHGSLVMRLPDSEI 980
Query: 320 TNRFALLFGNLDGGIGCIAPIDELTFRRLQSLQRKLVDAVPHVCGLNPRSFRQFHSNGKG 379
++FG ++G IG IA + + + L+ LQ L + V GL+ +R F N +
Sbjct: 981 GQIPTVIFGTVNGVIGVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSF--NNEK 1038
Query: 380 HRPGPDNIIDFELLAHYEMLSLDEQLDVAQQIGTTRSQILSNFSDIS 426
N +D +L+ + LS ++ D+++ + ++ +++
Sbjct: 1039 RTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELT 1085
>AT4G21100.1 | chr4:11258916-11265309 REVERSE LENGTH=1089
Length = 1088
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 157/348 (45%), Gaps = 35/348 (10%)
Query: 74 VRILELEKPGGHWETKSTIPMQLFENALTVRIVTLHNTTTKENETLLAIGTAYVLGED-V 132
VR+L+ + +E S+ P+ FE ++ L + T + +GTAYVL E+
Sbjct: 746 VRLLDAQS----FEFLSSYPLDAFECGCSI----LSCSFTDDKNVYYCVGTAYVLPEENE 797
Query: 133 AARGRVLLFSFTKSENSQNLVTEVYSKESKGAVSAVASLQGHLLIASGPKITLNKWT--- 189
+GR+L+F E L+TE KE+KGAV ++ + G LL + KI L KW
Sbjct: 798 PTKGRILVF--IVEEGRLQLITE---KETKGAVYSLNAFNGKLLASINQKIQLYKWMLRD 852
Query: 190 --GAELTAVAFYDAPLHVVSLNIVKNFVLFGDIHKSIYFLSWKEQGSQLSLLAKDFGSLD 247
EL + + + + + +F+ GD+ KSI L +K + + A+D+ +
Sbjct: 853 DGTRELQSECGHHGHILALYVQTRGDFIAVGDLMKSISLLIYKHEEGAIEERARDYNANW 912
Query: 248 CFATEFLIDGSTLSLVASDSDKNVQIFYYAPKMVESWKGQKLLSRAEFHVGAHITKFLR- 306
A E L D L +D+ N+ + + ++ E+H+G + +F
Sbjct: 913 MTAVEILNDDIYL---GTDNCFNIFTVKKNNEGATDEERARMEVVGEYHIGEFVNRFRHG 969
Query: 307 --LQMLPTQGLSSEKTNRFALLFGNLDGGIGCIAPIDELTFRRLQSLQRKLVDAVPHVCG 364
+ LP + T ++FG + G IG IA + + + L+ LQ L + V G
Sbjct: 970 SLVMKLPDSDIGQIPT----VIFGTVSGMIGVIASLPQEQYAFLEKLQTSLRKVIKGVGG 1025
Query: 365 LNPRSFRQFH-----SNGKGHRPGPDNIIDFELLAHYEMLSLDEQLDV 407
L+ +R F+ + KG+ G D I F L+ +M + + +DV
Sbjct: 1026 LSHEQWRSFNNEKRTAEAKGYLDG-DLIESFLDLSRGKMEEISKGMDV 1072
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,059,610
Number of extensions: 363658
Number of successful extensions: 846
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 839
Number of HSP's successfully gapped: 3
Length of query: 432
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 331
Effective length of database: 8,337,553
Effective search space: 2759730043
Effective search space used: 2759730043
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)