BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0252200 Os04g0252200|AK120441
(432 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0252200 CPSF A subunit, C-terminal domain containing p... 893 0.0
Os05g0592400 UV-damaged DNA binding protein 96 5e-20
AK067427 81 2e-15
>Os04g0252200 CPSF A subunit, C-terminal domain containing protein
Length = 432
Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/432 (100%), Positives = 432/432 (100%)
Query: 1 QLLACSKGPFAWHPTSGHVLCRAISLSPNSVCSFRPLNQVLSSMADQESVHHMDNDVTST 60
QLLACSKGPFAWHPTSGHVLCRAISLSPNSVCSFRPLNQVLSSMADQESVHHMDNDVTST
Sbjct: 1 QLLACSKGPFAWHPTSGHVLCRAISLSPNSVCSFRPLNQVLSSMADQESVHHMDNDVTST 60
Query: 61 DALHKTYTVDEFEVRILELEKPGGHWETKSTIPMQLFENALTVRIVTLHNTTTKENETLL 120
DALHKTYTVDEFEVRILELEKPGGHWETKSTIPMQLFENALTVRIVTLHNTTTKENETLL
Sbjct: 61 DALHKTYTVDEFEVRILELEKPGGHWETKSTIPMQLFENALTVRIVTLHNTTTKENETLL 120
Query: 121 AIGTAYVLGEDVAARGRVLLFSFTKSENSQNLVTEVYSKESKGAVSAVASLQGHLLIASG 180
AIGTAYVLGEDVAARGRVLLFSFTKSENSQNLVTEVYSKESKGAVSAVASLQGHLLIASG
Sbjct: 121 AIGTAYVLGEDVAARGRVLLFSFTKSENSQNLVTEVYSKESKGAVSAVASLQGHLLIASG 180
Query: 181 PKITLNKWTGAELTAVAFYDAPLHVVSLNIVKNFVLFGDIHKSIYFLSWKEQGSQLSLLA 240
PKITLNKWTGAELTAVAFYDAPLHVVSLNIVKNFVLFGDIHKSIYFLSWKEQGSQLSLLA
Sbjct: 181 PKITLNKWTGAELTAVAFYDAPLHVVSLNIVKNFVLFGDIHKSIYFLSWKEQGSQLSLLA 240
Query: 241 KDFGSLDCFATEFLIDGSTLSLVASDSDKNVQIFYYAPKMVESWKGQKLLSRAEFHVGAH 300
KDFGSLDCFATEFLIDGSTLSLVASDSDKNVQIFYYAPKMVESWKGQKLLSRAEFHVGAH
Sbjct: 241 KDFGSLDCFATEFLIDGSTLSLVASDSDKNVQIFYYAPKMVESWKGQKLLSRAEFHVGAH 300
Query: 301 ITKFLRLQMLPTQGLSSEKTNRFALLFGNLDGGIGCIAPIDELTFRRLQSLQRKLVDAVP 360
ITKFLRLQMLPTQGLSSEKTNRFALLFGNLDGGIGCIAPIDELTFRRLQSLQRKLVDAVP
Sbjct: 301 ITKFLRLQMLPTQGLSSEKTNRFALLFGNLDGGIGCIAPIDELTFRRLQSLQRKLVDAVP 360
Query: 361 HVCGLNPRSFRQFHSNGKGHRPGPDNIIDFELLAHYEMLSLDEQLDVAQQIGTTRSQILS 420
HVCGLNPRSFRQFHSNGKGHRPGPDNIIDFELLAHYEMLSLDEQLDVAQQIGTTRSQILS
Sbjct: 361 HVCGLNPRSFRQFHSNGKGHRPGPDNIIDFELLAHYEMLSLDEQLDVAQQIGTTRSQILS 420
Query: 421 NFSDISLGTSFL 432
NFSDISLGTSFL
Sbjct: 421 NFSDISLGTSFL 432
>Os05g0592400 UV-damaged DNA binding protein
Length = 1090
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 17/307 (5%)
Query: 113 TKENETLLAIGTAYVLGED-VAARGRVLLFSFTKSENSQNLVTEVYSKESKGAVSAVASL 171
+ +N +GTAYVL E+ ++GR+L+F+ + L+ E KE+KGAV ++ +
Sbjct: 779 SDDNNVYYCVGTAYVLPEENEPSKGRILVFAV--EDGRLQLIVE---KETKGAVYSLNAF 833
Query: 172 QGHLLIASGPKITLNKWT-----GAELTAVAFYDAPLHVVSLNIVKNFVLFGDIHKSIYF 226
G LL A KI L KW EL + + + + +F++ GD+ KSI
Sbjct: 834 NGKLLAAINQKIQLYKWMLREDGSHELQSECGHHGHILALYTQTRGDFIVVGDLMKSISL 893
Query: 227 LSWKEQGSQLSLLAKDFGSLDCFATEFLIDGSTLSLVASDSDKNVQIFYYAPKMVESWKG 286
L +K + S + LA+D+ + A E L D + ++++ N+ +
Sbjct: 894 LVYKHEESAIEELARDYNANWMSAVEMLDDE---IYIGAENNYNIFTVRKNSDAATDEER 950
Query: 287 QKLLSRAEFHVGAHITKFLRLQMLPTQGLSSEKTNRFALLFGNLDGGIGCIAPIDELTFR 346
+L E+H+G + + LR L + SE ++FG ++G IG IA + +
Sbjct: 951 GRLEVVGEYHLGEFVNR-LRHGSLVMRLPDSEMGQIPTVIFGTINGVIGIIASLPHEQYV 1009
Query: 347 RLQSLQRKLVDAVPHVCGLNPRSFRQFHSNGKGHRPGPDNIIDFELLAHYEMLSLDEQLD 406
L+ LQ LV + V L+ +R FH++ K N +D +L+ + LS ++ +
Sbjct: 1010 FLEKLQSTLVKFIKGVGNLSHEQWRSFHNDKKTSE--ARNFLDGDLIESFLDLSRNKMEE 1067
Query: 407 VAQQIGT 413
VA+ +G
Sbjct: 1068 VAKGMGV 1074
>AK067427
Length = 1315
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 122/257 (47%), Gaps = 18/257 (7%)
Query: 113 TKENETLLAIGTAYVLGED-VAARGRVLLFSFTKSENSQNLVTEVYSKESKGAVSAVASL 171
+ +N +GTAYVL E+ ++GR+L+F+ + L+ E KE+KGAV ++ +
Sbjct: 779 SDDNNVYYCVGTAYVLPEENEPSKGRILVFAV--EDGRLQLIVE---KETKGAVYSLNAF 833
Query: 172 QGHLLIASGPKITLNKWT-----GAELTAVAFYDAPLHVVSLNIVKNFVLFGDIHKSIYF 226
G LL A KI L KW EL + + + + +F++ GD+ KSI
Sbjct: 834 NGKLLAAINQKIQLYKWMLREDGSHELQSECGHHGHILALYTQTRGDFIVVGDLMKSISL 893
Query: 227 LSWKEQGSQLSLLAKDFGSLDCFATEFLIDGSTLSLVASDSDKNVQIFYYAPKMVESWKG 286
L +K + S + LA+D+ + A E L D + ++++ N+ +
Sbjct: 894 LVYKHEESAIEELARDYNANWMSAVEMLDDE---IYIGAENNYNIFTVRKNSDAATDEER 950
Query: 287 QKLLSRAEFHVGAHITKFLRLQMLPTQGLSSEKTNRFALLFGNLDGGIGCIAPIDELTFR 346
+L E+H+G + + LR L + SE ++FG ++G IG IA + +
Sbjct: 951 GRLEVVGEYHLGEFVNR-LRHGSLVMRLPDSEMGQIPTVIFGTINGVIGIIASLPHEQYA 1009
Query: 347 RLQSLQRKLV---DAVP 360
+ LQ+++V DA P
Sbjct: 1010 LIHQLQQRVVIFSDAGP 1026
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,865,004
Number of extensions: 541724
Number of successful extensions: 1089
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1085
Number of HSP's successfully gapped: 3
Length of query: 432
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 328
Effective length of database: 11,605,545
Effective search space: 3806618760
Effective search space used: 3806618760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)