BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0585400 Os05g0585400|AK067538
(302 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0585400 Conserved hypothetical protein 599 e-172
Os01g0622700 Conserved hypothetical protein 388 e-108
Os01g0236400 Conserved hypothetical protein 114 1e-25
Os01g0760900 Conserved hypothetical protein 89 6e-18
>Os05g0585400 Conserved hypothetical protein
Length = 302
Score = 599 bits (1545), Expect = e-172, Method: Compositional matrix adjust.
Identities = 290/302 (96%), Positives = 290/302 (96%)
Query: 1 MQPLRPSPXXXXXXXXXXXXPTTVDEASMERSKSFVKALQELKNLRPQLYSASEYCEKSY 60
MQPLRPSP PTTVDEASMERSKSFVKALQELKNLRPQLYSASEYCEKSY
Sbjct: 1 MQPLRPSPAAGGWAGVAGVGPTTVDEASMERSKSFVKALQELKNLRPQLYSASEYCEKSY 60
Query: 61 LHSEQKQMVLENLKDYAVRAVVNAVDHLGTVAYKLTDLFEQQASEVSTVELKVARLNQQI 120
LHSEQKQMVLENLKDYAVRAVVNAVDHLGTVAYKLTDLFEQQASEVSTVELKVARLNQQI
Sbjct: 61 LHSEQKQMVLENLKDYAVRAVVNAVDHLGTVAYKLTDLFEQQASEVSTVELKVARLNQQI 120
Query: 121 LTCQIFTDRAGLRQQKIGGTTFKHHKHYILPSTGHKRTQAARLQTDNGQDSKPKPYPSAK 180
LTCQIFTDRAGLRQQKIGGTTFKHHKHYILPSTGHKRTQAARLQTDNGQDSKPKPYPSAK
Sbjct: 121 LTCQIFTDRAGLRQQKIGGTTFKHHKHYILPSTGHKRTQAARLQTDNGQDSKPKPYPSAK 180
Query: 181 TLSWHLSSENSISTTGAQKYTFTLGDTISSKPASNGSMYLLGKDIPASPMHKPLQPNGNT 240
TLSWHLSSENSISTTGAQKYTFTLGDTISSKPASNGSMYLLGKDIPASPMHKPLQPNGNT
Sbjct: 181 TLSWHLSSENSISTTGAQKYTFTLGDTISSKPASNGSMYLLGKDIPASPMHKPLQPNGNT 240
Query: 241 SFDAKKNVGSKDQPGFMHMSTFNALDKPRGREIQKVPVSTKSMLATLFIKHKSAKTRKAS 300
SFDAKKNVGSKDQPGFMHMSTFNALDKPRGREIQKVPVSTKSMLATLFIKHKSAKTRKAS
Sbjct: 241 SFDAKKNVGSKDQPGFMHMSTFNALDKPRGREIQKVPVSTKSMLATLFIKHKSAKTRKAS 300
Query: 301 VR 302
VR
Sbjct: 301 VR 302
>Os01g0622700 Conserved hypothetical protein
Length = 306
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/283 (67%), Positives = 227/283 (80%), Gaps = 7/283 (2%)
Query: 21 PTTVDEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLENLKDYAVRA 80
PTTVDEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVL+NLKDYAVRA
Sbjct: 30 PTTVDEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLDNLKDYAVRA 89
Query: 81 VVNAVDHLGTVAYKLTDLFEQQASEVSTVELKVARLNQQILTCQIFTDRAGLRQQKIGGT 140
+VNAVDHLGTVAYKLTDL+EQQASEVST+ELKVA LNQQ+LTCQ +TD+ G+RQQ++ GT
Sbjct: 90 LVNAVDHLGTVAYKLTDLYEQQASEVSTLELKVACLNQQVLTCQTYTDKEGIRQQQMTGT 149
Query: 141 TFKHHKHYILPSTGHKRTQA-ARLQTDNGQDSKPKPYPSAKTLSWHLSSENSISTTGAQK 199
+HHKHYI+P+ +KR QA + +QTD DS+P+PYPSAKTL WHL+SE + T GA++
Sbjct: 150 ATRHHKHYIVPTLANKRMQAFSEMQTDADIDSRPRPYPSAKTLFWHLASEKNSKTNGARQ 209
Query: 200 YTFTLGDTISSKPASNGSMYLLGKDIPASPMHKPLQPNGNTSFDAKKNVGSKDQPGFMHM 259
F L +T ++KPAS GK+ SP+ K LQ N +S A NVG KDQPG H+
Sbjct: 210 SEFVLEETKATKPASR------GKEPSTSPLPKHLQTNLASSDFAMHNVGMKDQPGVRHL 263
Query: 260 STFNALDKPRGREIQKVPVSTKSMLATLFIKHKSAKTRKASVR 302
S+F++ D PRGR+IQK P+ TKSMLA F+KHKS K + SVR
Sbjct: 264 SSFSSFDNPRGRQIQKAPLRTKSMLAAFFVKHKSGKMKNVSVR 306
>Os01g0236400 Conserved hypothetical protein
Length = 317
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 87/132 (65%)
Query: 22 TTVDEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLENLKDYAVRAV 81
T+ D +S++ F +L++L+NLR QLYSA+EY E Y ++ QK V+ +LKDY V A+
Sbjct: 23 TSEDMSSLQEGLLFSDSLKDLRNLRSQLYSAAEYFEVFYRNNSQKSTVMTSLKDYTVEAL 82
Query: 82 VNAVDHLGTVAYKLTDLFEQQASEVSTVELKVARLNQQILTCQIFTDRAGLRQQKIGGTT 141
V+ VDHLG V+YK+ +L ++++ EV+ E +V+ + Q++ CQ D+ G QQ +
Sbjct: 83 VSTVDHLGFVSYKVDNLVKERSDEVNETEFRVSSVEQRVRICQQTIDQEGRSQQSLLIRA 142
Query: 142 FKHHKHYILPST 153
K+H+ YILP T
Sbjct: 143 PKYHRRYILPGT 154
>Os01g0760900 Conserved hypothetical protein
Length = 254
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 78/128 (60%), Gaps = 1/128 (0%)
Query: 27 ASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLENLKDYAVRAVVNAVD 86
+S+ + F AL+ELK+LR QL+ ++ CEK++L +E+K+++LE+ K Y A+V +D
Sbjct: 30 SSLIGAAGFDGALRELKDLRSQLHQTADCCEKAFLDTEKKKLILESTKGYICDAIVAVID 89
Query: 87 HLGTVAYKLTDLFEQQASEVSTVELKVARLNQQILTCQIFTDRAGLRQQKIGGTTFKHHK 146
HLGTV+ KL Q+ E++ E K+ L Q++LTC+ + L + ++H+
Sbjct: 90 HLGTVSSKLEQQL-QEKIEITQTEKKLNFLKQRLLTCEQYAITLKLLTVRGDNDAIQYHR 148
Query: 147 HYILPSTG 154
Y+ STG
Sbjct: 149 RYLSQSTG 156
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.126 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,969,539
Number of extensions: 359130
Number of successful extensions: 670
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 4
Length of query: 302
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 202
Effective length of database: 11,814,401
Effective search space: 2386509002
Effective search space used: 2386509002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)