Os01g0622700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0622700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.31 | 0.302 | 12.2 | -0.905 | 1.8 | 0.502 | 0.514 | 2.51 | 0.0197 | 6.9 | 30.37 | 800 | -- | -- |
| 41.62 | 0.3 | 12.2 | -1.19 | 1.77 | 0.741 | 0.358 | -- | 0.024 | 6.93 | 30.34 | 845 | -- | -- |
| 41.84 | 0.301 | 12.1 | -0.82 | 1.75 | 0.385 | -- | 2.88 | 0.0203 | 6.92 | 30.7 | 873 | -- | -- |
| 42.04 | 0.302 | 12.2 | -1.18 | 1.76 | 0.716 | -- | -- | 0.0188 | 6.93 | 30.36 | 866 | -- | -- |
| 179.78 | 0.624 | 12.2 | -0.676 | -- | 0.264 | -- | 3.14 | 0.0567 | -- | 30.88 | 4256 | -- | -- |
| 56.81 | 0.353 | 12.2 | -1.04 | 1.63 | -- | 0.11 | -- | -0.0785 | 6.77 | -- | -- | -- | -- |
| 56.84 | 0.353 | 12.2 | -1.04 | 1.63 | -- | -- | -- | -0.0788 | 6.77 | -- | -- | -- | -- |
| 178.99 | 0.623 | 12.2 | -0.869 | -- | 0.574 | -- | -- | 0.109 | -- | 31.9 | 5752 | -- | -- |
| 77.46 | 0.41 | 12.2 | -- | 1.76 | 0.559 | -- | -- | 0.0818 | 6.91 | 30.76 | 766 | -- | -- |
| 195.79 | 0.654 | 12.2 | -1.01 | -- | -- | -- | -- | -0.047 | -- | -- | -- | -- | -- |
| 85.44 | 0.432 | 12.2 | -- | 1.62 | -- | -- | -- | 0.0372 | 6.81 | -- | -- | -- | -- |
| 211.85 | 0.678 | 12.2 | -- | -- | 0.429 | -- | -- | 0.156 | -- | 30.7 | 5657 | -- | -- |
| 222.44 | 0.696 | 12.2 | -- | -- | -- | -- | -- | 0.0645 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.60 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 12 |
| 2 | 40.62 | temperature | 30.0 | 720 | < th | dose independent | rect. | 22 | 19 |
| 3 | 40.67 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 8 | 40.90 | temperature | 30.0 | 720 | > th | dose independent | rect. | 16 | 22 |
| 9 | 40.94 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 10 |
| 14 | 41.08 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 15 | 41.10 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 17 | 41.10 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 25 | 41.32 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 14 |
| 30 | 41.37 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 32 | 41.38 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 21 |
| 56 | 41.54 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 23 |
| 63 | 41.58 | temperature | 30.0 | 720 | > th | dose independent | sin | 1 | NA |
| 74 | 41.64 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 10 |
| 94 | 41.67 | temperature | 30.0 | 720 | < th | dose independent | rect. | 1 | 16 |
| 97 | 41.68 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 108 | 41.73 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 19 |
| 110 | 41.74 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 23 |
| 116 | 41.76 | temperature | 30.0 | 720 | < th | dose independent | sin | 0 | NA |
| 117 | 41.76 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 123 | 41.80 | temperature | 30.0 | 720 | > th | dose independent | no | NA | NA |
| 237 | 41.84 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 240 | 41.87 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 241 | 41.87 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 242 | 41.87 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 244 | 41.88 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 262 | 41.90 | temperature | 30.0 | 720 | > th | dose independent | rect. | 9 | 5 |
| 281 | 41.92 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 287 | 41.94 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 298 | 41.98 | temperature | 30.0 | 720 | < th | dose independent | no | NA | NA |
| 301 | 41.98 | temperature | 30.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 304 | 41.99 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 309 | 42.00 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 314 | 42.00 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 323 | 42.02 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 331 | 42.04 | temperature | 30.0 | 720 | > th | dose independent | sin | 9 | NA |
| 414 | 42.11 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 432 | 42.12 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 19 | 14 |
| 502 | 42.22 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 506 | 42.22 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 15 |
| 516 | 42.24 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 531 | 42.25 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 532 | 42.25 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 535 | 42.26 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 536 | 42.26 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 540 | 42.26 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 541 | 42.26 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 548 | 42.27 | temperature | 30.0 | 1440 | < th | dose independent | sin | 6 | NA |
| 551 | 42.27 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 565 | 42.28 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 19 | 6 |
| 566 | 42.28 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 634 | 42.33 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 636 | 42.33 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 6 |
| 672 | 42.35 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 701 | 42.36 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 704 | 42.37 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 12 |
| 770 | 42.39 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 788 | 42.41 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 906 | 42.45 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 908 | 42.45 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 947 | 42.47 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 0 | NA |
| 955 | 42.47 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 6 | 22 |
| 966 | 42.48 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 970 | 42.48 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 971 | 42.48 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |