BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0622700 Os01g0622700|AK102399
(306 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46225.2 | chr2:18982113-18984074 FORWARD LENGTH=330 251 3e-67
AT3G49290.1 | chr3:18273407-18275221 FORWARD LENGTH=313 144 7e-35
AT5G24310.1 | chr5:8274637-8276325 FORWARD LENGTH=322 143 1e-34
AT5G42030.1 | chr5:16811518-16813087 REVERSE LENGTH=280 112 3e-25
>AT2G46225.2 | chr2:18982113-18984074 FORWARD LENGTH=330
Length = 329
Score = 251 bits (642), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 147/321 (45%), Positives = 189/321 (58%), Gaps = 61/321 (19%)
Query: 32 TVDEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLDNLKDYAVRALV 91
T+DE SMER+KSFVKALQELKNLRPQLYSA++YCEKSYLHSEQKQMVLDNLKDY V+ALV
Sbjct: 14 TLDEVSMERNKSFVKALQELKNLRPQLYSAADYCEKSYLHSEQKQMVLDNLKDYTVKALV 73
Query: 92 NAVDHLGTVAYKLTDLYEQQASEVSTLELKVACLNQQVLTCQTYTDKEGIRQQQMTGTAT 151
NAVDHLGTVA KLTDL++ Q S++ST+E++ +C++QQ+LTC+TY DKEG+RQQQ+
Sbjct: 74 NAVDHLGTVASKLTDLFDHQNSDISTMEMRASCVSQQLLTCRTYIDKEGLRQQQLLAVIP 133
Query: 152 RHHKHYIVPTLANKRM---------------QAFSEMQTDADIDSRPR------------ 184
HHKHYI+P NKR+ QA S +Q + S
Sbjct: 134 LHHKHYILPNSVNKRVHFSPLRRTDTRQNHYQAISRLQPSGAMSSSLSLLVNNTSSQISN 193
Query: 185 -----------PYPSAKTLFWHLASEKNSKTNGARQSEFVLEETKATKPASR-GKEPSTS 232
P++K+L WHL SE S G T P+S+ K S +
Sbjct: 194 SLSNMLGLTHLDAPASKSLSWHLGSETKSTLKG----------TSTVAPSSKDSKAFSKT 243
Query: 233 PLPKHL---QTNLAS---------SDFAMHNVGMKDQPGVRHLSSFSSFDNPRGRQIQKA 280
HL N+A+ S + KD + L++ S DN R+I +A
Sbjct: 244 SGVFHLLGDDENIANKKPLAGSQVSGVPAASTAHKDLEVPKLLTAHRSLDNNPRREIIQA 303
Query: 281 PLRTKSMLAAFFVKHKSGKMK 301
P+RTKS+L+AFFVK K+ K+K
Sbjct: 304 PVRTKSVLSAFFVKQKTPKLK 324
>AT3G49290.1 | chr3:18273407-18275221 FORWARD LENGTH=313
Length = 312
Score = 144 bits (362), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 99/151 (65%), Gaps = 6/151 (3%)
Query: 34 DEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLDNLKDYAVRALVNA 93
DE SM++S F LQ+LKNLR QLYSA+EY E SY ++KQ+V++ LKDYAV+ALVN
Sbjct: 11 DEVSMQQSMLFSDGLQDLKNLRAQLYSAAEYFELSYTTDDKKQIVVETLKDYAVKALVNT 70
Query: 94 VDHLGTVAYKLTDLYEQQASEVSTLELKVACLNQQVLTCQTYTDKEGIRQQQMTGTATRH 153
VDHLG+V YK+ D +++ EVS EL+V+C+ Q++ CQ Y D EG QQ + +
Sbjct: 71 VDHLGSVTYKVNDFIDEKVDEVSETELRVSCIEQRLRMCQEYMDHEGRSQQSLVIDTPKF 130
Query: 154 HKHYIVP-----TLAN-KRMQAFSEMQTDAD 178
HK YI+P T N ++++ F DAD
Sbjct: 131 HKRYILPAGEIMTATNLEKLKYFGSSLEDAD 161
>AT5G24310.1 | chr5:8274637-8276325 FORWARD LENGTH=322
Length = 321
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 93/133 (69%)
Query: 34 DEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLDNLKDYAVRALVNA 93
DE SM++S F +L++LKNLR QLYSA+EY E SY + EQKQ+V++ LKDYA++ALVN
Sbjct: 17 DEISMQQSMLFSDSLKDLKNLRTQLYSAAEYFELSYTNDEQKQIVVETLKDYAIKALVNT 76
Query: 94 VDHLGTVAYKLTDLYEQQASEVSTLELKVACLNQQVLTCQTYTDKEGIRQQQMTGTATRH 153
VDHLG+V YK+ D +++ EV+ EL+V+C+ Q++ CQ Y D EG QQ + +
Sbjct: 77 VDHLGSVTYKVNDFVDEKVDEVAGTELRVSCIEQRLRMCQEYMDHEGRSQQSLVIDTPKF 136
Query: 154 HKHYIVPTLANKR 166
HK Y +P+ KR
Sbjct: 137 HKRYFLPSGEIKR 149
>AT5G42030.1 | chr5:16811518-16813087 REVERSE LENGTH=280
Length = 279
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 78/127 (61%)
Query: 34 DEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLDNLKDYAVRALVNA 93
DE M+++ F + L++LKNLR QLYSA+EY E SY +E K+ V++ LK+YA +A+VN
Sbjct: 18 DELFMKQTLQFSETLKDLKNLRKQLYSAAEYFETSYGKAEHKETVIETLKEYAAKAVVNT 77
Query: 94 VDHLGTVAYKLTDLYEQQASEVSTLELKVACLNQQVLTCQTYTDKEGIRQQQMTGTATRH 153
VDHLG+V+ K ++ ST L+++ L Q++ C+ Y K G Q + RH
Sbjct: 78 VDHLGSVSDKFNSFLSDNSTHFSTTHLRLSSLEQRMRLCRDYMGKSGTHQHLLLFQYPRH 137
Query: 154 HKHYIVP 160
HK Y P
Sbjct: 138 HKRYFFP 144
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.124 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,502,066
Number of extensions: 211134
Number of successful extensions: 717
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 716
Number of HSP's successfully gapped: 5
Length of query: 306
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 208
Effective length of database: 8,419,801
Effective search space: 1751318608
Effective search space used: 1751318608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 111 (47.4 bits)