BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0622700 Os01g0622700|AK102399
(306 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0622700 Conserved hypothetical protein 584 e-167
Os05g0585400 Conserved hypothetical protein 385 e-107
Os01g0236400 Conserved hypothetical protein 117 1e-26
Os01g0760900 Conserved hypothetical protein 83 2e-16
>Os01g0622700 Conserved hypothetical protein
Length = 306
Score = 584 bits (1505), Expect = e-167, Method: Compositional matrix adjust.
Identities = 283/306 (92%), Positives = 283/306 (92%)
Query: 1 MQQQQAWXXXXXXXXXXXXXXXXXXXXXXXTTVDEASMERSKSFVKALQELKNLRPQLYS 60
MQQQQAW TTVDEASMERSKSFVKALQELKNLRPQLYS
Sbjct: 1 MQQQQAWAAGLGGLAVAGVGEEGGGGGPAPTTVDEASMERSKSFVKALQELKNLRPQLYS 60
Query: 61 ASEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLYEQQASEVSTLEL 120
ASEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLYEQQASEVSTLEL
Sbjct: 61 ASEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVDHLGTVAYKLTDLYEQQASEVSTLEL 120
Query: 121 KVACLNQQVLTCQTYTDKEGIRQQQMTGTATRHHKHYIVPTLANKRMQAFSEMQTDADID 180
KVACLNQQVLTCQTYTDKEGIRQQQMTGTATRHHKHYIVPTLANKRMQAFSEMQTDADID
Sbjct: 121 KVACLNQQVLTCQTYTDKEGIRQQQMTGTATRHHKHYIVPTLANKRMQAFSEMQTDADID 180
Query: 181 SRPRPYPSAKTLFWHLASEKNSKTNGARQSEFVLEETKATKPASRGKEPSTSPLPKHLQT 240
SRPRPYPSAKTLFWHLASEKNSKTNGARQSEFVLEETKATKPASRGKEPSTSPLPKHLQT
Sbjct: 181 SRPRPYPSAKTLFWHLASEKNSKTNGARQSEFVLEETKATKPASRGKEPSTSPLPKHLQT 240
Query: 241 NLASSDFAMHNVGMKDQPGVRHLSSFSSFDNPRGRQIQKAPLRTKSMLAAFFVKHKSGKM 300
NLASSDFAMHNVGMKDQPGVRHLSSFSSFDNPRGRQIQKAPLRTKSMLAAFFVKHKSGKM
Sbjct: 241 NLASSDFAMHNVGMKDQPGVRHLSSFSSFDNPRGRQIQKAPLRTKSMLAAFFVKHKSGKM 300
Query: 301 KNVSVR 306
KNVSVR
Sbjct: 301 KNVSVR 306
>Os05g0585400 Conserved hypothetical protein
Length = 302
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/282 (67%), Positives = 226/282 (80%), Gaps = 7/282 (2%)
Query: 31 TTVDEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLDNLKDYAVRAL 90
TTVDEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVL+NLKDYAVRA+
Sbjct: 22 TTVDEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLENLKDYAVRAV 81
Query: 91 VNAVDHLGTVAYKLTDLYEQQASEVSTLELKVACLNQQVLTCQTYTDKEGIRQQQMTGTA 150
VNAVDHLGTVAYKLTDL+EQQASEVST+ELKVA LNQQ+LTCQ +TD+ G+RQQ++ GT
Sbjct: 82 VNAVDHLGTVAYKLTDLFEQQASEVSTVELKVARLNQQILTCQIFTDRAGLRQQKIGGTT 141
Query: 151 TRHHKHYIVPTLANKRMQAFSEMQTDADIDSRPRPYPSAKTLFWHLASEKNSKTNGARQS 210
+HHKHYI+P+ +KR QA + +QTD DS+P+PYPSAKTL WHL+SE + T GA++
Sbjct: 142 FKHHKHYILPSTGHKRTQA-ARLQTDNGQDSKPKPYPSAKTLSWHLSSENSISTTGAQKY 200
Query: 211 EFVLEETKATKPASR------GKEPSTSPLPKHLQTNLASSDFAMHNVGMKDQPGVRHLS 264
F L +T ++KPAS GK+ SP+ K LQ N +S A NVG KDQPG H+S
Sbjct: 201 TFTLGDTISSKPASNGSMYLLGKDIPASPMHKPLQPNGNTSFDAKKNVGSKDQPGFMHMS 260
Query: 265 SFSSFDNPRGRQIQKAPLRTKSMLAAFFVKHKSGKMKNVSVR 306
+F++ D PRGR+IQK P+ TKSMLA F+KHKS K + SVR
Sbjct: 261 TFNALDKPRGREIQKVPVSTKSMLATLFIKHKSAKTRKASVR 302
>Os01g0236400 Conserved hypothetical protein
Length = 317
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 88/130 (67%)
Query: 31 TTVDEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLDNLKDYAVRAL 90
T+ D +S++ F +L++L+NLR QLYSA+EY E Y ++ QK V+ +LKDY V AL
Sbjct: 23 TSEDMSSLQEGLLFSDSLKDLRNLRSQLYSAAEYFEVFYRNNSQKSTVMTSLKDYTVEAL 82
Query: 91 VNAVDHLGTVAYKLTDLYEQQASEVSTLELKVACLNQQVLTCQTYTDKEGIRQQQMTGTA 150
V+ VDHLG V+YK+ +L ++++ EV+ E +V+ + Q+V CQ D+EG QQ + A
Sbjct: 83 VSTVDHLGFVSYKVDNLVKERSDEVNETEFRVSSVEQRVRICQQTIDQEGRSQQSLLIRA 142
Query: 151 TRHHKHYIVP 160
++H+ YI+P
Sbjct: 143 PKYHRRYILP 152
>Os01g0760900 Conserved hypothetical protein
Length = 254
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 76/123 (61%), Gaps = 1/123 (0%)
Query: 36 ASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLDNLKDYAVRALVNAVD 95
+S+ + F AL+ELK+LR QL+ ++ CEK++L +E+K+++L++ K Y A+V +D
Sbjct: 30 SSLIGAAGFDGALRELKDLRSQLHQTADCCEKAFLDTEKKKLILESTKGYICDAIVAVID 89
Query: 96 HLGTVAYKLTDLYEQQASEVSTLELKVACLNQQVLTCQTYTDKEGIRQQQMTGTATRHHK 155
HLGTV+ KL Q+ E++ E K+ L Q++LTC+ Y + + A ++H+
Sbjct: 90 HLGTVSSKLEQQL-QEKIEITQTEKKLNFLKQRLLTCEQYAITLKLLTVRGDNDAIQYHR 148
Query: 156 HYI 158
Y+
Sbjct: 149 RYL 151
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.124 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,363,476
Number of extensions: 320962
Number of successful extensions: 999
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 997
Number of HSP's successfully gapped: 4
Length of query: 306
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 205
Effective length of database: 11,762,187
Effective search space: 2411248335
Effective search space used: 2411248335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 156 (64.7 bits)