Os05g0585400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0585400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 391.25 | 0.929 | 8.02 | -4.18 | 2.23 | 3.33 | 1.76 | -4.89 | -1.3 | 4.45 | 24.76 | 1139 | 11 | -- |
| 399.15 | 0.931 | 7.91 | -3.01 | 2.13 | 3.03 | 1.32 | -- | -1.06 | 4.57 | 24.75 | 1073 | 9.77 | -- |
| 398.21 | 0.929 | 8 | -3.96 | 2.17 | 3.42 | -- | -4.29 | -1.22 | 4.59 | 24.97 | 1095 | 9.95 | -- |
| 403 | 0.935 | 7.89 | -3.03 | 2.15 | 3.07 | -- | -- | -1.02 | 4.62 | 24.68 | 1075 | 9.85 | -- |
| 536.88 | 1.08 | 8.13 | -4.19 | -- | 4.88 | -- | -4.58 | -1.75 | -- | 22.27 | 871 | 7.57 | -- |
| 670.2 | 1.21 | 7.82 | -2.21 | 2.93 | -- | 2.35 | -- | -0.735 | 3.88 | -- | -- | -- | -- |
| 686.14 | 1.23 | 7.83 | -2.24 | 2.95 | -- | -- | -- | -0.749 | 3.95 | -- | -- | -- | -- |
| 464.15 | 1 | 7.98 | -3.24 | -- | 5.38 | -- | -- | -1.3 | -- | -2.005 | 1162 | 11.5 | -- |
| 624.09 | 1.16 | 7.77 | -- | 2.23 | 2.64 | -- | -- | -0.528 | 4.45 | 25.4 | 971 | 7.25 | -- |
| 1161.8 | 1.59 | 7.84 | -2.12 | -- | -- | -- | -- | -0.67 | -- | -- | -- | -- | -- |
| 818.44 | 1.34 | 7.77 | -- | 2.9 | -- | -- | -- | -0.499 | 3.96 | -- | -- | -- | -- |
| 712.57 | 1.24 | 7.85 | -- | -- | 4.34 | -- | -- | -0.799 | -- | -2.846 | 1022 | 10.3 | -- |
| 1280.3 | 1.67 | 7.78 | -- | -- | -- | -- | -- | -0.435 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 422.34 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 2 | 422.92 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 3 | 423.10 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 8 | 423.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 15 |
| 11 | 423.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 13 | 423.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 17 | 423.95 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 34 | 424.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 18 |
| 39 | 424.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 77 | 424.45 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 80 | 424.46 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 92 | 424.64 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 94 | 424.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 106 | 424.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 109 | 424.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 133 | 425.33 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 153 | 425.55 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 158 | 425.67 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 159 | 425.70 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 195 | 426.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 9 |
| 248 | 427.35 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 310 | 428.77 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 323 | 429.30 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 347 | 430.84 | wind | 5 | 43200 | > th | dose independent | sin | 2 | NA |
| 368 | 431.58 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 375 | 431.88 | wind | 5 | 43200 | < th | dose independent | sin | 2 | NA |
| 377 | 431.92 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 380 | 432.22 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 389 | 432.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 408 | 433.53 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 409 | 433.55 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 437 | 434.54 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 456 | 434.88 | wind | 5 | 43200 | > th | dose dependent | sin | 2 | NA |
| 523 | 436.48 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 21 |
| 531 | 436.78 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 548 | 437.57 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 591 | 439.04 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 620 | 439.57 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 625 | 439.76 | wind | 7 | 43200 | > th | dose independent | rect. | 7 | 15 |
| 630 | 439.81 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 635 | 439.89 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 636 | 439.91 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 663 | 440.46 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 688 | 440.91 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 22 |
| 697 | 440.97 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 699 | 441.00 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 18 |
| 701 | 441.01 | wind | 7 | 43200 | < th | dose independent | rect. | 1 | 21 |
| 705 | 441.05 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 18 |
| 708 | 441.07 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 740 | 441.33 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 744 | 441.38 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 747 | 441.43 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 13 |
| 764 | 441.54 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 21 |
| 776 | 441.68 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 21 |
| 777 | 441.68 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 21 |
| 805 | 441.97 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 845 | 442.31 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 18 |
| 889 | 442.62 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 22 |
| 941 | 443.18 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 946 | 443.26 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 17 |
| 948 | 443.27 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 954 | 443.30 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 21 |