BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0585400 Os05g0585400|AK067538
         (302 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46225.2  | chr2:18982113-18984074 FORWARD LENGTH=330          229   1e-60
AT5G24310.1  | chr5:8274637-8276325 FORWARD LENGTH=322            138   3e-33
AT3G49290.1  | chr3:18273407-18275221 FORWARD LENGTH=313          138   3e-33
AT5G42030.1  | chr5:16811518-16813087 REVERSE LENGTH=280          111   5e-25

>AT2G46225.2 | chr2:18982113-18984074 FORWARD LENGTH=330
          Length = 329

 Score =  229 bits (584), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 138/318 (43%), Positives = 189/318 (59%), Gaps = 42/318 (13%)

Query: 23  TVDEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLENLKDYAVRAVV 82
           T+DE SMER+KSFVKALQELKNLRPQLYSA++YCEKSYLHSEQKQMVL+NLKDY V+A+V
Sbjct: 14  TLDEVSMERNKSFVKALQELKNLRPQLYSAADYCEKSYLHSEQKQMVLDNLKDYTVKALV 73

Query: 83  NAVDHLGTVAYKLTDLFEQQASEVSTVELKVARLNQQILTCQIFTDRAGLRQQKIGGTTF 142
           NAVDHLGTVA KLTDLF+ Q S++ST+E++ + ++QQ+LTC+ + D+ GLRQQ++     
Sbjct: 74  NAVDHLGTVASKLTDLFDHQNSDISTMEMRASCVSQQLLTCRTYIDKEGLRQQQLLAVIP 133

Query: 143 KHHKHYILPSTGHKRTQAARL-QTDNGQD-----SKPKP--------------------- 175
            HHKHYILP++ +KR   + L +TD  Q+     S+ +P                     
Sbjct: 134 LHHKHYILPNSVNKRVHFSPLRRTDTRQNHYQAISRLQPSGAMSSSLSLLVNNTSSQISN 193

Query: 176 ------------YPSAKTLSWHLSSENSISTTGAQKYTFTLGDTISSKPASNGSMYLLGK 223
                        P++K+LSWHL SE   +  G      +  D+ +    S G  +LLG 
Sbjct: 194 SLSNMLGLTHLDAPASKSLSWHLGSETKSTLKGTSTVAPSSKDSKAFSKTS-GVFHLLGD 252

Query: 224 DIPASPMHKPLQPNGNTSFDAKKNVGSKDQPGFMHMSTFNALDKPRGREIQKVPVSTKSM 283
           D   +   KPL  +  +   A  +   KD      ++   +LD    REI + PV TKS+
Sbjct: 253 DENIAN-KKPLAGSQVSGVPA-ASTAHKDLEVPKLLTAHRSLDNNPRREIIQAPVRTKSV 310

Query: 284 LATLFIKHKSAKTRKASV 301
           L+  F+K K+ K +   V
Sbjct: 311 LSAFFVKQKTPKLKAGYV 328



>AT5G24310.1 | chr5:8274637-8276325 FORWARD LENGTH=322
          Length = 321

 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/133 (50%), Positives = 92/133 (69%)

Query: 25  DEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLENLKDYAVRAVVNA 84
           DE SM++S  F  +L++LKNLR QLYSA+EY E SY + EQKQ+V+E LKDYA++A+VN 
Sbjct: 17  DEISMQQSMLFSDSLKDLKNLRTQLYSAAEYFELSYTNDEQKQIVVETLKDYAIKALVNT 76

Query: 85  VDHLGTVAYKLTDLFEQQASEVSTVELKVARLNQQILTCQIFTDRAGLRQQKIGGTTFKH 144
           VDHLG+V YK+ D  +++  EV+  EL+V+ + Q++  CQ + D  G  QQ +   T K 
Sbjct: 77  VDHLGSVTYKVNDFVDEKVDEVAGTELRVSCIEQRLRMCQEYMDHEGRSQQSLVIDTPKF 136

Query: 145 HKHYILPSTGHKR 157
           HK Y LPS   KR
Sbjct: 137 HKRYFLPSGEIKR 149



>AT3G49290.1 | chr3:18273407-18275221 FORWARD LENGTH=313
          Length = 312

 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/128 (51%), Positives = 89/128 (69%)

Query: 25  DEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLENLKDYAVRAVVNA 84
           DE SM++S  F   LQ+LKNLR QLYSA+EY E SY   ++KQ+V+E LKDYAV+A+VN 
Sbjct: 11  DEVSMQQSMLFSDGLQDLKNLRAQLYSAAEYFELSYTTDDKKQIVVETLKDYAVKALVNT 70

Query: 85  VDHLGTVAYKLTDLFEQQASEVSTVELKVARLNQQILTCQIFTDRAGLRQQKIGGTTFKH 144
           VDHLG+V YK+ D  +++  EVS  EL+V+ + Q++  CQ + D  G  QQ +   T K 
Sbjct: 71  VDHLGSVTYKVNDFIDEKVDEVSETELRVSCIEQRLRMCQEYMDHEGRSQQSLVIDTPKF 130

Query: 145 HKHYILPS 152
           HK YILP+
Sbjct: 131 HKRYILPA 138



>AT5G42030.1 | chr5:16811518-16813087 REVERSE LENGTH=280
          Length = 279

 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 80/130 (61%)

Query: 25  DEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVLENLKDYAVRAVVNA 84
           DE  M+++  F + L++LKNLR QLYSA+EY E SY  +E K+ V+E LK+YA +AVVN 
Sbjct: 18  DELFMKQTLQFSETLKDLKNLRKQLYSAAEYFETSYGKAEHKETVIETLKEYAAKAVVNT 77

Query: 85  VDHLGTVAYKLTDLFEQQASEVSTVELKVARLNQQILTCQIFTDRAGLRQQKIGGTTFKH 144
           VDHLG+V+ K        ++  ST  L+++ L Q++  C+ +  ++G  Q  +     +H
Sbjct: 78  VDHLGSVSDKFNSFLSDNSTHFSTTHLRLSSLEQRMRLCRDYMGKSGTHQHLLLFQYPRH 137

Query: 145 HKHYILPSTG 154
           HK Y  P  G
Sbjct: 138 HKRYFFPQQG 147



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.126    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,876,763
Number of extensions: 238634
Number of successful extensions: 558
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 5
Length of query: 302
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,419,801
Effective search space: 1717639404
Effective search space used: 1717639404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)