BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0582100 Os05g0582100|AK120492
(529 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0582100 Cas1p-like family protein 1050 0.0
Os01g0631100 Cas1p-like family protein 948 0.0
Os03g0314200 Cas1p-like family protein 751 0.0
>Os05g0582100 Cas1p-like family protein
Length = 529
Score = 1050 bits (2716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/529 (96%), Positives = 511/529 (96%)
Query: 1 VSFLLGLFPVLIGWIYAEILEYRKSLLYGKVHSDANLENETMKEDDKAVLLEGGQSKSPS 60
VSFLLGLFPVLIGWIYAEILEYRKSLLYGKVHSDANLENETMKEDDKAVLLEGGQSKSPS
Sbjct: 1 VSFLLGLFPVLIGWIYAEILEYRKSLLYGKVHSDANLENETMKEDDKAVLLEGGQSKSPS 60
Query: 61 TKLRNMSTKANLIRFITMDESFLLENRAVLRAMAEVGIILVYFYICDRTNIFPETKKSYN 120
TKLRNMSTKANLIRFITMDESFLLENRAVLRAMAEVGIILVYFYICDRTNIFPETKKSYN
Sbjct: 61 TKLRNMSTKANLIRFITMDESFLLENRAVLRAMAEVGIILVYFYICDRTNIFPETKKSYN 120
Query: 121 RDXXXXXXXXXXXXXXXXXXKKHNEKSAFTGKSILYLNRHQTEEWKGWMQVLFLMYHYFA 180
RD KKHNEKSAFTGKSILYLNRHQTEEWKGWMQVLFLMYHYFA
Sbjct: 121 RDLFLFLYILLIIASALTSLKKHNEKSAFTGKSILYLNRHQTEEWKGWMQVLFLMYHYFA 180
Query: 181 ATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSIARFAQMMWRLNFFVAFCCIVLDNDY 240
ATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSIARFAQMMWRLNFFVAFCCIVLDNDY
Sbjct: 181 ATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSIARFAQMMWRLNFFVAFCCIVLDNDY 240
Query: 241 MLYYICPMHTLFTLMVYGSLGLFNKYNEKPSVMAIKIACCFLTVILIWEIPGVFEFLWAP 300
MLYYICPMHTLFTLMVYGSLGLFNKYNEKPSVMAIKIACCFLTVILIWEIPGVFEFLWAP
Sbjct: 241 MLYYICPMHTLFTLMVYGSLGLFNKYNEKPSVMAIKIACCFLTVILIWEIPGVFEFLWAP 300
Query: 301 FTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVERWMEKLEESETK 360
FTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVERWMEKLEESETK
Sbjct: 301 FTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVERWMEKLEESETK 360
Query: 361 VRLFIKGAIVTLSLTAGYLWYEYIYRLDKITYNKYHPYTSWIPITVYICLRNCTQQLRSA 420
VRLFIKGAIVTLSLTAGYLWYEYIYRLDKITYNKYHPYTSWIPITVYICLRNCTQQLRSA
Sbjct: 361 VRLFIKGAIVTLSLTAGYLWYEYIYRLDKITYNKYHPYTSWIPITVYICLRNCTQQLRSA 420
Query: 421 SLALFAWLGKITLETYISQIHIWLRSSTPNGQPKWLLSFVPDYPLLNFMLTTAIYLLLSY 480
SLALFAWLGKITLETYISQIHIWLRSSTPNGQPKWLLSFVPDYPLLNFMLTTAIYLLLSY
Sbjct: 421 SLALFAWLGKITLETYISQIHIWLRSSTPNGQPKWLLSFVPDYPLLNFMLTTAIYLLLSY 480
Query: 481 RVFEITGVLKGAFIPSRDNNRLYQNFIAGIAISACLYFCSLILVKITIV 529
RVFEITGVLKGAFIPSRDNNRLYQNFIAGIAISACLYFCSLILVKITIV
Sbjct: 481 RVFEITGVLKGAFIPSRDNNRLYQNFIAGIAISACLYFCSLILVKITIV 529
>Os01g0631100 Cas1p-like family protein
Length = 539
Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/529 (86%), Positives = 481/529 (90%), Gaps = 1/529 (0%)
Query: 1 VSFLLGLFPVLIGWIYAEILEYRKSLLYGKVHSDANLENETMKEDDKAVLLEGGQSKSPS 60
VSFLLGLFPVLI WIY+E+LEYRKS KVHSD+NLEN T+KEDDK VLLEGG SKSPS
Sbjct: 12 VSFLLGLFPVLIAWIYSEVLEYRKSSSM-KVHSDSNLENGTVKEDDKTVLLEGGLSKSPS 70
Query: 61 TKLRNMSTKANLIRFITMDESFLLENRAVLRAMAEVGIILVYFYICDRTNIFPETKKSYN 120
TK R STKANLIRFITMDESFLLENRAVLRAMAE GI+LVYFYICDRTNIFPE+KKSYN
Sbjct: 71 TKFRINSTKANLIRFITMDESFLLENRAVLRAMAEFGIVLVYFYICDRTNIFPESKKSYN 130
Query: 121 RDXXXXXXXXXXXXXXXXXXKKHNEKSAFTGKSILYLNRHQTEEWKGWMQVLFLMYHYFA 180
RD KKH++KSAF+GKSILYLNRHQTEEWKGWMQVLFLMYHYFA
Sbjct: 131 RDLFLFLYILLIIASALTSLKKHHDKSAFSGKSILYLNRHQTEEWKGWMQVLFLMYHYFA 190
Query: 181 ATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSIARFAQMMWRLNFFVAFCCIVLDNDY 240
ATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFS+ARFAQMMWRLNFFVAFCCIVLDNDY
Sbjct: 191 ATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSLARFAQMMWRLNFFVAFCCIVLDNDY 250
Query: 241 MLYYICPMHTLFTLMVYGSLGLFNKYNEKPSVMAIKIACCFLTVILIWEIPGVFEFLWAP 300
MLYYICPMHTLFTLMVYGSLGLFNKYNE PSVMA+KI CFL VILIWEIPGVFE LW+P
Sbjct: 251 MLYYICPMHTLFTLMVYGSLGLFNKYNEIPSVMAMKIVSCFLAVILIWEIPGVFELLWSP 310
Query: 301 FTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVERWMEKLEESETK 360
FTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVERWMEKLEESETK
Sbjct: 311 FTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVERWMEKLEESETK 370
Query: 361 VRLFIKGAIVTLSLTAGYLWYEYIYRLDKITYNKYHPYTSWIPITVYICLRNCTQQLRSA 420
VRL IKG I+++SL AGYLWYEYIY+LDKITYNKYHPYTSWIPITVYI LRNCTQQLR+
Sbjct: 371 VRLSIKGTIISISLVAGYLWYEYIYKLDKITYNKYHPYTSWIPITVYISLRNCTQQLRNV 430
Query: 421 SLALFAWLGKITLETYISQIHIWLRSSTPNGQPKWLLSFVPDYPLLNFMLTTAIYLLLSY 480
SL LFAWLGKITLETYISQIHIWLRS+ PNGQPKWLLSF+P YPLLNFML TAIYLL+SY
Sbjct: 431 SLTLFAWLGKITLETYISQIHIWLRSNMPNGQPKWLLSFIPGYPLLNFMLATAIYLLISY 490
Query: 481 RVFEITGVLKGAFIPSRDNNRLYQNFIAGIAISACLYFCSLILVKITIV 529
RVFE+TGVLK AFIPSRDNNRLYQNF+AGIAIS CLYF S++L+KI IV
Sbjct: 491 RVFELTGVLKSAFIPSRDNNRLYQNFVAGIAISVCLYFLSIVLLKIPIV 539
>Os03g0314200 Cas1p-like family protein
Length = 552
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/530 (67%), Positives = 419/530 (79%), Gaps = 6/530 (1%)
Query: 1 VSFLLGLFPVLIGWIYAEILEYRKSLLYGKVHSDANL---ENETMKEDDKAVLLEGGQSK 57
VS LLG V W YAE+L YRK+ K HSD NL ++ + K +D+ +LLE G +
Sbjct: 24 VSALLGFLWVFTAWAYAEVLYYRKNAASIKAHSDVNLAVMDSSSNKGEDQVMLLEEG-VQ 82
Query: 58 SPSTKLRNMSTKANLIRFITMDESFLLENRAVLRAMAEVGIILVYFYICDRTNIFPETKK 117
+P K S + + R +D++ +LENR LRA++E G L+YFYICDRTN+ E+ K
Sbjct: 83 APVQKPVYASLTSQMFRLFLLDQALILENRLTLRAISEFGGHLLYFYICDRTNLLGESAK 142
Query: 118 SYNRDXXXXXXXXXXXXXXXXXXKKHNEKSAFTGKSILYLNRHQTEEWKGWMQVLFLMYH 177
+Y+RD K H +KS+FTGKSILYLNRHQTEEWKGWMQVLFLMYH
Sbjct: 143 NYSRDMFLFLYFLLIIVAAMTSFKVHQDKSSFTGKSILYLNRHQTEEWKGWMQVLFLMYH 202
Query: 178 YFAATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSIARFAQMMWRLNFFVAFCCIVLD 237
YF A EIYNAIRVFIAAYVWMTGFGNFSYYY++KDFS+ARFAQMMWRLNFFVAFCCIVL+
Sbjct: 203 YFNAKEIYNAIRVFIAAYVWMTGFGNFSYYYVRKDFSLARFAQMMWRLNFFVAFCCIVLN 262
Query: 238 NDYMLYYICPMHTLFTLMVYGSLGLFNKYNEKPSVMAIKIACCFLTVILIWEIPGVFEFL 297
NDY LYYICPMHTLFTLMVYG+LG+ NKYNE SVMAIK CFL VILIWEIPGVFE +
Sbjct: 263 NDYTLYYICPMHTLFTLMVYGALGILNKYNEIGSVMAIKFVACFLVVILIWEIPGVFEIV 322
Query: 298 WAPFTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVERWMEKLEES 357
W+PFTFLLGY DP SK +LP LHEWHFRSGLDRYIWI+GMIYAY+HP VE+WMEKLEE+
Sbjct: 323 WSPFTFLLGYTDP--SKPDLPRLHEWHFRSGLDRYIWIVGMIYAYYHPTVEKWMEKLEEA 380
Query: 358 ETKVRLFIKGAIVTLSLTAGYLWYEYIYRLDKITYNKYHPYTSWIPITVYICLRNCTQQL 417
ETK +L+IK IV+++LTAG LWYEYIY+LDKITYNKYHPYTSWIPITVYICLRN TQ+
Sbjct: 381 ETKTKLYIKALIVSIALTAGCLWYEYIYKLDKITYNKYHPYTSWIPITVYICLRNFTQEF 440
Query: 418 RSASLALFAWLGKITLETYISQIHIWLRSSTPNGQPKWLLSFVPDYPLLNFMLTTAIYLL 477
R SL LFAWLGKITLETYISQ HIWLRS PNGQPKWLL+ +P+YP+LNFMLTTAIY+
Sbjct: 441 RCCSLTLFAWLGKITLETYISQFHIWLRSKVPNGQPKWLLTIIPNYPMLNFMLTTAIYVA 500
Query: 478 LSYRVFEITGVLKGAFIPSRDNNRLYQNFIAGIAISACLYFCSLILVKIT 527
+S+R+FE+T LK AF+PSRDN RL NF+AGIAIS LY S ++V +
Sbjct: 501 VSHRLFELTNTLKIAFVPSRDNKRLSYNFVAGIAISVALYSLSFLIVGVA 550
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.142 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,440,443
Number of extensions: 631130
Number of successful extensions: 1683
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1677
Number of HSP's successfully gapped: 3
Length of query: 529
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 424
Effective length of database: 11,553,331
Effective search space: 4898612344
Effective search space used: 4898612344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 158 (65.5 bits)