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Os01g0631100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cas1p-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.63 (0.013) R2 : 0.474
β1 : 0.793 (0.0476) R2dD : 0.332 R2D : 0.148
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.403 (0.0278) R2dN8 : 0.326 R2N8 : 0.142
σ : 0.244
deviance : 27.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.56 0.218 8.63 0.677 0.21 -0.571 -0.08 -0.568 0.32 7.46 22.3 2384 -- --
21.77 0.217 8.64 0.631 0.204 -0.407 -0.075 -- 0.312 7.68 32.92 2619 -- --
21.57 0.216 8.63 0.681 0.21 -0.55 -- -0.543 0.317 7.59 22.71 2385 -- --
21.78 0.217 8.64 0.627 0.203 -0.409 -- -- 0.315 7.81 33 2605 -- --
23.48 0.226 8.64 0.711 -- -0.488 -- -0.513 0.322 -- 25.3 2838 -- --
25.04 0.235 8.63 0.791 0.204 -- -0.188 -- 0.399 6.71 -- -- -- --
25.11 0.235 8.62 0.789 0.203 -- -- -- 0.399 6.98 -- -- -- --
23.85 0.227 8.65 0.626 -- -0.405 -- -- 0.317 -- 32.8 2825 -- --
22.89 0.223 8.69 -- 0.201 -0.698 -- -- 0.118 7.15 24.95 47520 -- --
27.28 0.244 8.63 0.793 -- -- -- -- 0.403 -- -- -- -- --
41.5 0.301 8.64 -- 0.212 -- -- -- 0.312 6.75 -- -- -- --
25.07 0.233 8.69 -- -- -0.703 -- -- 0.121 -- 24.94 47520 -- --
43.86 0.309 8.65 -- -- -- -- -- 0.315 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.87 temperature 30.0 10 < th dose independent rect. 9 5
2 20.12 temperature 30.0 270 < th dose dependent rect. 7 19
3 20.22 temperature 30.0 30 < th dose dependent rect. 9 20
15 20.45 atmosphere 1015.0 270 < th dose dependent rect. 3 3
17 20.46 atmosphere 1015.0 270 < th dose dependent rect. 1 6
18 20.49 temperature 30.0 270 < th dose independent rect. 7 5
19 20.51 temperature 30.0 270 < th dose dependent rect. 7 7
24 20.56 humidity 80.0 270 > th dose dependent rect. 3 3
25 20.57 temperature 10.0 270 > th dose dependent rect. 3 14
41 20.71 temperature 10.0 270 > th dose dependent rect. 11 21
42 20.72 temperature 30.0 270 < th dose dependent rect. 8 2
43 20.72 temperature 30.0 270 < th dose dependent rect. 7 4
51 20.77 temperature 30.0 10 < th dose independent rect. 9 20
55 20.78 humidity 80.0 270 > th dose dependent rect. 2 5
56 20.79 humidity 90.0 270 > th dose independent rect. 3 3
61 20.82 humidity 90.0 270 > th dose independent rect. 1 6
86 20.89 radiation 10.0 10 < th dose dependent sin 12 NA
91 20.91 atmosphere 995.0 10 > th dose dependent rect. 9 20
92 20.92 temperature 10.0 720 > th dose dependent rect. 20 19
94 20.93 temperature 20.0 30 > th dose independent rect. 12 21
98 20.94 temperature 30.0 90 < th dose independent rect. 9 18
107 20.95 temperature 10.0 10 > th dose dependent rect. 12 21
110 20.96 temperature 30.0 270 < th dose independent rect. 6 21
114 20.97 temperature 20.0 30 > th dose independent rect. 14 19
126 20.99 atmosphere 1015.0 10 < th dose dependent rect. 5 4
128 20.99 temperature 10.0 10 > th dose dependent rect. 5 15
131 21.00 temperature 10.0 10 > th dose dependent rect. 14 19
132 21.00 radiation 10.0 270 < th dose dependent rect. 7 19
144 21.02 radiation 40.0 4320 < th dose dependent rect. 19 11
161 21.07 radiation 40.0 4320 < th dose dependent rect. 24 6
173 21.10 temperature 30.0 270 < th dose independent rect. 9 1
180 21.11 wind 9.0 4320 < th dose independent rect. 4 5
184 21.12 wind 9.0 270 < th dose independent rect. 6 21
190 21.12 atmosphere 1015.0 10 < th dose dependent rect. 14 19
195 21.13 temperature 10.0 270 > th dose independent rect. 7 5
196 21.13 atmosphere 995.0 270 > th dose independent rect. 7 5
197 21.13 atmosphere 1015.0 270 < th dose independent rect. 7 5
198 21.13 temperature 10.0 270 > th dose independent rect. 12 19
204 21.14 temperature 25.0 270 < th dose independent rect. 3 3
205 21.14 atmosphere 1010.0 270 < th dose independent rect. 3 3
208 21.14 precipitation 0.1 270 < th dose independent rect. 7 5
211 21.14 humidity 50.0 10 > th dose dependent rect. 5 4
213 21.14 precipitation 0.1 270 < th dose dependent rect. 7 5
217 21.15 radiation 10.0 270 < th dose independent rect. 3 3
221 21.16 humidity 50.0 270 > th dose independent rect. 7 5
229 21.17 wind 9.0 270 < th dose independent rect. 3 3
230 21.17 temperature 10.0 270 > th dose independent rect. 3 3
233 21.17 humidity 50.0 270 > th dose independent rect. 3 3
236 21.17 atmosphere 995.0 270 > th dose independent rect. 3 3
241 21.17 temperature 10.0 270 > th dose independent rect. 6 21
244 21.17 temperature 10.0 270 > th dose dependent rect. 11 11
253 21.19 wind 1.0 10 > th dose independent rect. 9 5
254 21.19 wind 9.0 270 < th dose independent rect. 7 5
256 21.19 temperature 30.0 270 < th dose independent rect. 21 15
257 21.19 humidity 50.0 270 > th dose dependent rect. 8 3
260 21.19 radiation 40.0 270 < th dose dependent rect. 3 3
264 21.20 precipitation 0.1 270 < th dose independent rect. 3 3
271 21.20 precipitation 0.1 270 < th dose dependent rect. 3 3
275 21.20 radiation 40.0 270 < th dose dependent rect. 15 11
280 21.21 temperature 10.0 270 > th dose independent rect. 8 3
281 21.21 atmosphere 995.0 270 > th dose independent rect. 8 3
282 21.21 atmosphere 1015.0 270 < th dose independent rect. 8 3
283 21.21 wind 9.0 14400 < th dose independent rect. 6 4
284 21.21 atmosphere 1010.0 270 < th dose independent rect. 2 5
285 21.21 precipitation 0.1 270 < th dose independent rect. 12 19
286 21.21 temperature 10.0 270 > th dose independent rect. 11 21
288 21.21 wind 9.0 270 < th dose dependent rect. 3 3
294 21.21 precipitation 0.1 270 < th dose dependent rect. 12 19
296 21.22 humidity 50.0 270 > th dose independent rect. 8 3
306 21.23 precipitation 0.1 270 < th dose independent rect. 8 3
309 21.23 precipitation 0.1 270 < th dose dependent rect. 8 3
331 21.25 wind 7.0 270 < th dose independent rect. 17 10
333 21.25 atmosphere 1015.0 270 < th dose independent rect. 12 19
339 21.25 radiation 40.0 270 < th dose dependent rect. 7 19
341 21.26 wind 9.0 270 < th dose independent rect. 8 3
343 21.26 wind 9.0 270 < th dose independent rect. 12 19
344 21.26 precipitation 0.1 270 < th dose independent rect. 6 21
347 21.26 temperature 10.0 720 > th dose dependent rect. 3 5
352 21.26 precipitation 0.1 270 < th dose dependent rect. 6 21
358 21.27 temperature 15.0 720 > th dose dependent rect. 5 1
367 21.28 humidity 70.0 270 > th dose independent rect. 7 19
380 21.29 wind 9.0 270 < th dose independent rect. 7 19
382 21.29 precipitation 0.1 10 < th dose independent rect. 14 19
384 21.29 atmosphere 1010.0 270 < th dose independent rect. 11 21
388 21.29 precipitation 0.1 10 < th dose dependent rect. 14 19
406 21.30 atmosphere 1015.0 270 < th dose dependent rect. 12 19
412 21.31 radiation 20.0 270 < th dose independent rect. 2 5
413 21.31 radiation 10.0 270 < th dose independent rect. 15 11
426 21.32 humidity 70.0 270 > th dose independent rect. 8 3
427 21.32 temperature 10.0 10 > th dose independent rect. 9 5
429 21.32 atmosphere 995.0 10 > th dose independent rect. 9 5
430 21.32 atmosphere 1015.0 10 < th dose independent rect. 9 5
431 21.32 precipitation 0.1 10 < th dose independent rect. 9 5
433 21.32 temperature 10.0 10 > th dose independent rect. 14 19
434 21.32 radiation 1.0 10 > th dose independent rect. 14 19
437 21.32 precipitation 0.1 10 < th dose dependent rect. 9 5
445 21.32 temperature 10.0 270 > th dose dependent rect. 1 21
448 21.33 atmosphere 995.0 270 > th dose independent rect. 12 19
449 21.33 radiation 40.0 30 < th dose independent rect. 14 19
450 21.33 radiation 1.0 30 > th dose independent rect. 12 21
452 21.33 temperature 10.0 270 > th dose dependent rect. 3 3
454 21.33 temperature 10.0 1440 > th dose dependent rect. 5 4
465 21.34 wind 9.0 270 < th dose independent rect. 2 5
466 21.34 temperature 10.0 270 > th dose independent rect. 2 5
470 21.34 humidity 50.0 270 > th dose independent rect. 2 5
472 21.34 atmosphere 995.0 270 > th dose independent rect. 2 5
479 21.34 temperature 10.0 270 > th dose independent rect. 7 19
482 21.34 precipitation 0.1 270 < th dose independent rect. 11 21
489 21.34 precipitation 0.1 270 < th dose dependent rect. 11 21
494 21.35 radiation 1.0 10 > th dose independent rect. 9 5
509 21.36 precipitation 0.1 270 < th dose independent rect. 2 5
517 21.36 radiation 40.0 30 < th dose dependent rect. 5 4
518 21.36 atmosphere 995.0 10 > th dose dependent rect. 9 5
519 21.36 precipitation 0.1 270 < th dose dependent rect. 2 5
521 21.36 atmosphere 995.0 270 > th dose dependent rect. 22 14
526 21.37 wind 1.0 270 > th dose independent rect. 7 5
541 21.37 temperature 30.0 1440 < th dose dependent rect. 5 4
549 21.37 humidity 90.0 270 > th dose dependent rect. 20 11
561 21.38 atmosphere 995.0 10 > th dose independent rect. 9 20
562 21.38 wind 9.0 270 < th dose independent rect. 11 21
579 21.39 radiation 40.0 10 < th dose independent rect. 5 4
580 21.39 radiation 1.0 270 > th dose independent rect. 7 5
587 21.39 radiation 40.0 270 < th dose dependent rect. 2 5
597 21.40 atmosphere 1015.0 10 < th dose independent rect. 14 19
600 21.40 temperature 25.0 1440 < th dose dependent rect. 7 1
613 21.41 wind 7.0 10 < th dose independent rect. 5 4
615 21.41 temperature 10.0 10 > th dose independent rect. 5 4
617 21.41 temperature 30.0 10 < th dose independent rect. 5 4
618 21.41 humidity 50.0 10 > th dose independent rect. 5 4
620 21.41 atmosphere 995.0 10 > th dose independent rect. 5 4
623 21.41 atmosphere 1015.0 10 < th dose independent rect. 5 4
624 21.41 temperature 10.0 1440 > th dose independent rect. 10 5
641 21.41 temperature 10.0 1440 > th dose independent rect. 15 19
644 21.41 temperature 10.0 10 > th dose independent rect. 9 20
664 21.42 atmosphere 1010.0 270 < th dose independent rect. 11 10
666 21.42 precipitation 0.1 270 < th dose independent rect. 7 19
668 21.42 wind 9.0 270 < th dose dependent rect. 2 5
680 21.42 precipitation 0.1 270 < th dose dependent rect. 7 19
700 21.43 radiation 1.0 4320 < th dose independent rect. 24 6
705 21.43 radiation 1.0 4320 < th dose independent rect. 20 10
709 21.43 wind 9.0 10 < th dose independent rect. 14 19
714 21.43 wind 9.0 10 < th dose dependent rect. 5 4
732 21.44 precipitation 0.1 10 < th dose independent rect. 5 4
737 21.44 temperature 30.0 10 < th dose independent rect. 23 15
740 21.44 radiation 40.0 270 < th dose independent rect. 7 19
749 21.44 precipitation 0.1 10 < th dose dependent rect. 5 4
756 21.44 temperature 10.0 10 > th dose dependent rect. 5 18
760 21.45 radiation 1.0 4320 < th dose independent rect. 3 3
770 21.45 atmosphere 995.0 270 > th dose independent rect. 6 21
771 21.45 temperature 20.0 1440 < th dose dependent rect. 2 1
773 21.45 atmosphere 995.0 270 > th dose dependent rect. 7 4
799 21.46 temperature 15.0 270 > th dose independent rect. 2 15
812 21.46 temperature 25.0 4320 < th dose dependent rect. 6 10
816 21.47 radiation 1.0 4320 > th dose independent rect. 4 2
857 21.47 temperature 25.0 4320 < th dose dependent rect. 6 8
881 21.48 radiation 1.0 4320 > th dose dependent rect. 4 2
898 21.48 temperature 20.0 1440 < th dose dependent rect. 23 7
951 21.49 humidity 60.0 270 > th dose dependent rect. 21 10
984 21.50 temperature 20.0 1440 < th dose dependent rect. 22 10