BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0631100 Os01g0631100|AK103098
(539 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0631100 Cas1p-like family protein 1067 0.0
Os05g0582100 Cas1p-like family protein 948 0.0
Os03g0314200 Cas1p-like family protein 772 0.0
>Os01g0631100 Cas1p-like family protein
Length = 539
Score = 1067 bits (2759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/539 (96%), Positives = 521/539 (96%)
Query: 1 MEVFGPVTAGQVSFLLGLFPVLIAWIYSEVLEYRKSSSMKVHSDSNLENGTVKEDDKTVL 60
MEVFGPVTAGQVSFLLGLFPVLIAWIYSEVLEYRKSSSMKVHSDSNLENGTVKEDDKTVL
Sbjct: 1 MEVFGPVTAGQVSFLLGLFPVLIAWIYSEVLEYRKSSSMKVHSDSNLENGTVKEDDKTVL 60
Query: 61 LEGGLSKSPSTKFRINSTKANLIRFITMDESFLLENRAVLRAMAEFGIVLVYFYICDRTN 120
LEGGLSKSPSTKFRINSTKANLIRFITMDESFLLENRAVLRAMAEFGIVLVYFYICDRTN
Sbjct: 61 LEGGLSKSPSTKFRINSTKANLIRFITMDESFLLENRAVLRAMAEFGIVLVYFYICDRTN 120
Query: 121 IFPESKKSYNRDXXXXXXXXXXXXXXXXXXKKHHDKSAFSGKSILYLNRHQTEEWKGWMQ 180
IFPESKKSYNRD KKHHDKSAFSGKSILYLNRHQTEEWKGWMQ
Sbjct: 121 IFPESKKSYNRDLFLFLYILLIIASALTSLKKHHDKSAFSGKSILYLNRHQTEEWKGWMQ 180
Query: 181 VLFLMYHYFAATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSLARFAQMMWRLNFFVA 240
VLFLMYHYFAATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSLARFAQMMWRLNFFVA
Sbjct: 181 VLFLMYHYFAATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSLARFAQMMWRLNFFVA 240
Query: 241 FCCIVLDNDYMLYYICPMHTLFTLMVYGSLGLFNKYNEIPSVMAMKIVSCFLAVILIWEI 300
FCCIVLDNDYMLYYICPMHTLFTLMVYGSLGLFNKYNEIPSVMAMKIVSCFLAVILIWEI
Sbjct: 241 FCCIVLDNDYMLYYICPMHTLFTLMVYGSLGLFNKYNEIPSVMAMKIVSCFLAVILIWEI 300
Query: 301 PGVFELLWSPFTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVERW 360
PGVFELLWSPFTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVERW
Sbjct: 301 PGVFELLWSPFTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVERW 360
Query: 361 MEKLEESETKVRLSIKGTIISISLVAGYLWYEYIYKLDKITYNKYHPYTSWIPITVYISL 420
MEKLEESETKVRLSIKGTIISISLVAGYLWYEYIYKLDKITYNKYHPYTSWIPITVYISL
Sbjct: 361 MEKLEESETKVRLSIKGTIISISLVAGYLWYEYIYKLDKITYNKYHPYTSWIPITVYISL 420
Query: 421 RNCTQQLRNVSLTLFAWLGKITLETYISQIHIWLRSNMPNGQPKWLLSFIPGYPLLNFML 480
RNCTQQLRNVSLTLFAWLGKITLETYISQIHIWLRSNMPNGQPKWLLSFIPGYPLLNFML
Sbjct: 421 RNCTQQLRNVSLTLFAWLGKITLETYISQIHIWLRSNMPNGQPKWLLSFIPGYPLLNFML 480
Query: 481 ATAIYLLISYRVFELTGVLKSAFIPSRDNNRLYQNFVAGIAISVCLYFLSIVLLKIPIV 539
ATAIYLLISYRVFELTGVLKSAFIPSRDNNRLYQNFVAGIAISVCLYFLSIVLLKIPIV
Sbjct: 481 ATAIYLLISYRVFELTGVLKSAFIPSRDNNRLYQNFVAGIAISVCLYFLSIVLLKIPIV 539
>Os05g0582100 Cas1p-like family protein
Length = 529
Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/529 (86%), Positives = 481/529 (90%), Gaps = 1/529 (0%)
Query: 12 VSFLLGLFPVLIAWIYSEVLEYRKSSSM-KVHSDSNLENGTVKEDDKTVLLEGGLSKSPS 70
VSFLLGLFPVLI WIY+E+LEYRKS KVHSD+NLEN T+KEDDK VLLEGG SKSPS
Sbjct: 1 VSFLLGLFPVLIGWIYAEILEYRKSLLYGKVHSDANLENETMKEDDKAVLLEGGQSKSPS 60
Query: 71 TKFRINSTKANLIRFITMDESFLLENRAVLRAMAEFGIVLVYFYICDRTNIFPESKKSYN 130
TK R STKANLIRFITMDESFLLENRAVLRAMAE GI+LVYFYICDRTNIFPE+KKSYN
Sbjct: 61 TKLRNMSTKANLIRFITMDESFLLENRAVLRAMAEVGIILVYFYICDRTNIFPETKKSYN 120
Query: 131 RDXXXXXXXXXXXXXXXXXXKKHHDKSAFSGKSILYLNRHQTEEWKGWMQVLFLMYHYFA 190
RD KKH++KSAF+GKSILYLNRHQTEEWKGWMQVLFLMYHYFA
Sbjct: 121 RDLFLFLYILLIIASALTSLKKHNEKSAFTGKSILYLNRHQTEEWKGWMQVLFLMYHYFA 180
Query: 191 ATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSLARFAQMMWRLNFFVAFCCIVLDNDY 250
ATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFS+ARFAQMMWRLNFFVAFCCIVLDNDY
Sbjct: 181 ATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSIARFAQMMWRLNFFVAFCCIVLDNDY 240
Query: 251 MLYYICPMHTLFTLMVYGSLGLFNKYNEIPSVMAMKIVSCFLAVILIWEIPGVFELLWSP 310
MLYYICPMHTLFTLMVYGSLGLFNKYNE PSVMA+KI CFL VILIWEIPGVFE LW+P
Sbjct: 241 MLYYICPMHTLFTLMVYGSLGLFNKYNEKPSVMAIKIACCFLTVILIWEIPGVFEFLWAP 300
Query: 311 FTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVERWMEKLEESETK 370
FTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVERWMEKLEESETK
Sbjct: 301 FTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVERWMEKLEESETK 360
Query: 371 VRLSIKGTIISISLVAGYLWYEYIYKLDKITYNKYHPYTSWIPITVYISLRNCTQQLRNV 430
VRL IKG I+++SL AGYLWYEYIY+LDKITYNKYHPYTSWIPITVYI LRNCTQQLR+
Sbjct: 361 VRLFIKGAIVTLSLTAGYLWYEYIYRLDKITYNKYHPYTSWIPITVYICLRNCTQQLRSA 420
Query: 431 SLTLFAWLGKITLETYISQIHIWLRSNMPNGQPKWLLSFIPGYPLLNFMLATAIYLLISY 490
SL LFAWLGKITLETYISQIHIWLRS+ PNGQPKWLLSF+P YPLLNFML TAIYLL+SY
Sbjct: 421 SLALFAWLGKITLETYISQIHIWLRSSTPNGQPKWLLSFVPDYPLLNFMLTTAIYLLLSY 480
Query: 491 RVFELTGVLKSAFIPSRDNNRLYQNFVAGIAISVCLYFLSIVLLKIPIV 539
RVFE+TGVLK AFIPSRDNNRLYQNF+AGIAIS CLYF S++L+KI IV
Sbjct: 481 RVFEITGVLKGAFIPSRDNNRLYQNFIAGIAISACLYFCSLILVKITIV 529
>Os03g0314200 Cas1p-like family protein
Length = 552
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/540 (69%), Positives = 433/540 (80%), Gaps = 7/540 (1%)
Query: 1 MEVFGPVTAGQVSFLLGLFPVLIAWIYSEVLEYRK-SSSMKVHSDSNL---ENGTVKEDD 56
M +T GQVS LLG V AW Y+EVL YRK ++S+K HSD NL ++ + K +D
Sbjct: 13 MAASTSLTPGQVSALLGFLWVFTAWAYAEVLYYRKNAASIKAHSDVNLAVMDSSSNKGED 72
Query: 57 KTVLLEGGLSKSPSTKFRINSTKANLIRFITMDESFLLENRAVLRAMAEFGIVLVYFYIC 116
+ +LLE G+ ++P K S + + R +D++ +LENR LRA++EFG L+YFYIC
Sbjct: 73 QVMLLEEGV-QAPVQKPVYASLTSQMFRLFLLDQALILENRLTLRAISEFGGHLLYFYIC 131
Query: 117 DRTNIFPESKKSYNRDXXXXXXXXXXXXXXXXXXKKHHDKSAFSGKSILYLNRHQTEEWK 176
DRTN+ ES K+Y+RD K H DKS+F+GKSILYLNRHQTEEWK
Sbjct: 132 DRTNLLGESAKNYSRDMFLFLYFLLIIVAAMTSFKVHQDKSSFTGKSILYLNRHQTEEWK 191
Query: 177 GWMQVLFLMYHYFAATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSLARFAQMMWRLN 236
GWMQVLFLMYHYF A EIYNAIRVFIAAYVWMTGFGNFSYYY++KDFSLARFAQMMWRLN
Sbjct: 192 GWMQVLFLMYHYFNAKEIYNAIRVFIAAYVWMTGFGNFSYYYVRKDFSLARFAQMMWRLN 251
Query: 237 FFVAFCCIVLDNDYMLYYICPMHTLFTLMVYGSLGLFNKYNEIPSVMAMKIVSCFLAVIL 296
FFVAFCCIVL+NDY LYYICPMHTLFTLMVYG+LG+ NKYNEI SVMA+K V+CFL VIL
Sbjct: 252 FFVAFCCIVLNNDYTLYYICPMHTLFTLMVYGALGILNKYNEIGSVMAIKFVACFLVVIL 311
Query: 297 IWEIPGVFELLWSPFTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPN 356
IWEIPGVFE++WSPFTFLLGY DP SK +LP LHEWHFRSGLDRYIWI+GMIYAY+HP
Sbjct: 312 IWEIPGVFEIVWSPFTFLLGYTDP--SKPDLPRLHEWHFRSGLDRYIWIVGMIYAYYHPT 369
Query: 357 VERWMEKLEESETKVRLSIKGTIISISLVAGYLWYEYIYKLDKITYNKYHPYTSWIPITV 416
VE+WMEKLEE+ETK +L IK I+SI+L AG LWYEYIYKLDKITYNKYHPYTSWIPITV
Sbjct: 370 VEKWMEKLEEAETKTKLYIKALIVSIALTAGCLWYEYIYKLDKITYNKYHPYTSWIPITV 429
Query: 417 YISLRNCTQQLRNVSLTLFAWLGKITLETYISQIHIWLRSNMPNGQPKWLLSFIPGYPLL 476
YI LRN TQ+ R SLTLFAWLGKITLETYISQ HIWLRS +PNGQPKWLL+ IP YP+L
Sbjct: 430 YICLRNFTQEFRCCSLTLFAWLGKITLETYISQFHIWLRSKVPNGQPKWLLTIIPNYPML 489
Query: 477 NFMLATAIYLLISYRVFELTGVLKSAFIPSRDNNRLYQNFVAGIAISVCLYFLSIVLLKI 536
NFML TAIY+ +S+R+FELT LK AF+PSRDN RL NFVAGIAISV LY LS +++ +
Sbjct: 490 NFMLTTAIYVAVSHRLFELTNTLKIAFVPSRDNKRLSYNFVAGIAISVALYSLSFLIVGV 549
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.141 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,595,893
Number of extensions: 632779
Number of successful extensions: 1743
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1737
Number of HSP's successfully gapped: 3
Length of query: 539
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 433
Effective length of database: 11,501,117
Effective search space: 4979983661
Effective search space used: 4979983661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 158 (65.5 bits)