Os03g0314200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cas1p-like family protein.
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Os03g0314200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cas1p-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.2 | 0.25 | 9.7 | -0.271 | 0.497 | -1.03 | 0.463 | -1.21 | 0.0424 | 7.56 | 15.46 | 78 | -- | -- |
| 29.14 | 0.251 | 9.67 | -0.102 | 0.529 | -0.949 | 0.41 | -- | 0.0839 | 7.61 | 18.44 | 49 | -- | -- |
| 28.75 | 0.25 | 9.7 | -0.274 | 0.505 | -0.944 | -- | -1.13 | 0.0459 | 7.43 | 16.91 | 67 | -- | -- |
| 29.63 | 0.254 | 9.67 | -0.0984 | 0.512 | -0.916 | -- | -- | 0.0909 | 7.48 | 18.71 | 63 | -- | -- |
| 37.66 | 0.286 | 9.7 | -0.21 | -- | -1.25 | -- | -1.22 | 0.0793 | -- | 15.72 | 265 | -- | -- |
| 40.89 | 0.3 | 9.71 | -0.309 | 0.696 | -- | 0.613 | -- | -0.0627 | 5.8 | -- | -- | -- | -- |
| 41.81 | 0.303 | 9.71 | -0.305 | 0.699 | -- | -- | -- | -0.0653 | 5.75 | -- | -- | -- | -- |
| 38.79 | 0.29 | 9.68 | -0.0365 | -- | -1.1 | -- | -- | 0.131 | -- | 19.03 | 272 | -- | -- |
| 29.86 | 0.255 | 9.67 | -- | 0.503 | -0.958 | -- | -- | 0.107 | 7.56 | 18.53 | 66 | -- | -- |
| 67.15 | 0.383 | 9.72 | -0.284 | -- | -- | -- | -- | -0.0488 | -- | -- | -- | -- | -- |
| 44.26 | 0.311 | 9.7 | -- | 0.694 | -- | -- | -- | -0.0313 | 5.77 | -- | -- | -- | -- |
| 38.83 | 0.29 | 9.68 | -- | -- | -1.12 | -- | -- | 0.137 | -- | 18.9 | 272 | -- | -- |
| 69.27 | 0.388 | 9.71 | -- | -- | -- | -- | -- | -0.0173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 13 | 27.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 32 | 27.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 43 | 27.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 54 | 27.71 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 74 | 28.03 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 79 | 28.17 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 85 | 28.27 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 99 | 28.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 102 | 28.41 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 103 | 28.41 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 123 | 28.49 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 127 | 28.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 136 | 28.60 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 142 | 28.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 151 | 28.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 180 | 28.87 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 189 | 28.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 227 | 29.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 229 | 29.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 244 | 29.15 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 23 |
| 253 | 29.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 269 | 29.30 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 23 |
| 270 | 29.31 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 21 |
| 306 | 29.41 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 388 | 29.67 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 390 | 29.68 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 23 |
| 398 | 29.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 411 | 29.74 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 424 | 29.78 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 23 |
| 433 | 29.80 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 442 | 29.82 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 23 |
| 458 | 29.85 | temperature | 15 | 90 | > th | dose dependent | sin | 2 | NA |
| 472 | 29.89 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 23 |
| 504 | 29.95 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 687 | 30.40 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 772 | 30.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 934 | 30.88 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 966 | 30.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 971 | 30.93 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |