BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0314200 Os03g0314200|AK100769
(552 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0314200 Cas1p-like family protein 1081 0.0
Os01g0631100 Cas1p-like family protein 756 0.0
Os05g0582100 Cas1p-like family protein 736 0.0
>Os03g0314200 Cas1p-like family protein
Length = 552
Score = 1081 bits (2796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/536 (97%), Positives = 524/536 (97%)
Query: 17 TSLTPGQVSALLGFLWVFTAWAYAEVLYYRKNAASIKAHSDVNLAVMDSSSNKGEDQVML 76
TSLTPGQVSALLGFLWVFTAWAYAEVLYYRKNAASIKAHSDVNLAVMDSSSNKGEDQVML
Sbjct: 17 TSLTPGQVSALLGFLWVFTAWAYAEVLYYRKNAASIKAHSDVNLAVMDSSSNKGEDQVML 76
Query: 77 LEEGVQAPVQKPVYASLTSQMFRLFLLDQALILENRLTLRAISEFGGHLLYFYICDRTNL 136
LEEGVQAPVQKPVYASLTSQMFRLFLLDQALILENRLTLRAISEFGGHLLYFYICDRTNL
Sbjct: 77 LEEGVQAPVQKPVYASLTSQMFRLFLLDQALILENRLTLRAISEFGGHLLYFYICDRTNL 136
Query: 137 LGESAKNYSRDMFLFLYFLLIIVAAMTSFKVHQDKSSFTGKSILYLNRHQTEEWKGWMQV 196
LGESAKNYSRDMFLFLYFLLIIVAAMTSFKVHQDKSSFTGKSILYLNRHQTEEWKGWMQV
Sbjct: 137 LGESAKNYSRDMFLFLYFLLIIVAAMTSFKVHQDKSSFTGKSILYLNRHQTEEWKGWMQV 196
Query: 197 LFLMYHYFNAKEIYNAIRVFIAAYVWMTGFGNFSYYYVRKDFSLARFAQMMWRLNFFVAF 256
LFLMYHYFNAKEIYNAIRVFIAAYVWMTGFGNFSYYYVRKDFSLARFAQMMWRLNFFVAF
Sbjct: 197 LFLMYHYFNAKEIYNAIRVFIAAYVWMTGFGNFSYYYVRKDFSLARFAQMMWRLNFFVAF 256
Query: 257 CCIVLNNDYTLYYICPMHTLFTLMVYGALGILNKYNEIGSVMAIKFVACFLVVILIWEIP 316
CCIVLNNDYTLYYICPMHTLFTLMVYGALGILNKYNEIGSVMAIKFVACFLVVILIWEIP
Sbjct: 257 CCIVLNNDYTLYYICPMHTLFTLMVYGALGILNKYNEIGSVMAIKFVACFLVVILIWEIP 316
Query: 317 GVFEIVWSPFTFLLGYTDPSKPDLPRLHEWHFRSGLDRYIWIVGMIYAYYHPTVEKWMXX 376
GVFEIVWSPFTFLLGYTDPSKPDLPRLHEWHFRSGLDRYIWIVGMIYAYYHPTVEKWM
Sbjct: 317 GVFEIVWSPFTFLLGYTDPSKPDLPRLHEWHFRSGLDRYIWIVGMIYAYYHPTVEKWMEK 376
Query: 377 XXXXXXXXXXYIKALIVSIALTAGCLWYEYIYKLDKITYNKYHPYTSWIPITVYICLRNF 436
YIKALIVSIALTAGCLWYEYIYKLDKITYNKYHPYTSWIPITVYICLRNF
Sbjct: 377 LEEAETKTKLYIKALIVSIALTAGCLWYEYIYKLDKITYNKYHPYTSWIPITVYICLRNF 436
Query: 437 TQEFRCCSLTLFAWLGKITLETYISQFHIWLRSKVPNGQPKWLLTIIPNYPMLNFMLTTA 496
TQEFRCCSLTLFAWLGKITLETYISQFHIWLRSKVPNGQPKWLLTIIPNYPMLNFMLTTA
Sbjct: 437 TQEFRCCSLTLFAWLGKITLETYISQFHIWLRSKVPNGQPKWLLTIIPNYPMLNFMLTTA 496
Query: 497 IYVAVSHRLFELTNTLKIAFVPSRDNKRLSYNFVAGIAISVALYSLSFLIVGVAGY 552
IYVAVSHRLFELTNTLKIAFVPSRDNKRLSYNFVAGIAISVALYSLSFLIVGVAGY
Sbjct: 497 IYVAVSHRLFELTNTLKIAFVPSRDNKRLSYNFVAGIAISVALYSLSFLIVGVAGY 552
>Os01g0631100 Cas1p-like family protein
Length = 539
Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/534 (70%), Positives = 436/534 (81%), Gaps = 7/534 (1%)
Query: 19 LTPGQVSALLGFLWVFTAWAYAEVLYYRKNAASIKAHSDVNLAVMDSSSNKGEDQVMLLE 78
+T GQVS LLG V AW Y+EVL YRK ++S+K HSD NL ++ + K +D+ +LLE
Sbjct: 7 VTAGQVSFLLGLFPVLIAWIYSEVLEYRK-SSSMKVHSDSNL---ENGTVKEDDKTVLLE 62
Query: 79 EGV-QAPVQKPVYASLTSQMFRLFLLDQALILENRLTLRAISEFGGHLLYFYICDRTNLL 137
G+ ++P K S + + R +D++ +LENR LRA++EFG L+YFYICDRTN+
Sbjct: 63 GGLSKSPSTKFRINSTKANLIRFITMDESFLLENRAVLRAMAEFGIVLVYFYICDRTNIF 122
Query: 138 GESAKNYSRDMFLFLYFLLIIVAAMTSFKVHQDKSSFTGKSILYLNRHQTEEWKGWMQVL 197
ES K+Y+RD+FLFLY LLII +A+TS K H DKS+F+GKSILYLNRHQTEEWKGWMQVL
Sbjct: 123 PESKKSYNRDLFLFLYILLIIASALTSLKKHHDKSAFSGKSILYLNRHQTEEWKGWMQVL 182
Query: 198 FLMYHYFNAKEIYNAIRVFIAAYVWMTGFGNFSYYYVRKDFSLARFAQMMWRLNFFVAFC 257
FLMYHYF A EIYNAIRVFIAAYVWMTGFGNFSYYY++KDFSLARFAQMMWRLNFFVAFC
Sbjct: 183 FLMYHYFAATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSLARFAQMMWRLNFFVAFC 242
Query: 258 CIVLNNDYTLYYICPMHTLFTLMVYGALGILNKYNEIGSVMAIKFVACFLVVILIWEIPG 317
CIVL+NDY LYYICPMHTLFTLMVYG+LG+ NKYNEI SVMA+K V+CFL VILIWEIPG
Sbjct: 243 CIVLDNDYMLYYICPMHTLFTLMVYGSLGLFNKYNEIPSVMAMKIVSCFLAVILIWEIPG 302
Query: 318 VFEIVWSPFTFLLGYTD--PSKPDLPRLHEWHFRSGLDRYIWIVGMIYAYYHPTVEKWMX 375
VFE++WSPFTFLLGY D PSK +LP LHEWHFRSGLDRYIWI+GMIYAY+HP VE+WM
Sbjct: 303 VFELLWSPFTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVERWME 362
Query: 376 XXXXXXXXXXXYIKALIVSIALTAGCLWYEYIYKLDKITYNKYHPYTSWIPITVYICLRN 435
IK I+SI+L AG LWYEYIYKLDKITYNKYHPYTSWIPITVYI LRN
Sbjct: 363 KLEESETKVRLSIKGTIISISLVAGYLWYEYIYKLDKITYNKYHPYTSWIPITVYISLRN 422
Query: 436 FTQEFRCCSLTLFAWLGKITLETYISQFHIWLRSKVPNGQPKWLLTIIPNYPMLNFMLTT 495
TQ+ R SLTLFAWLGKITLETYISQ HIWLRS +PNGQPKWLL+ IP YP+LNFML T
Sbjct: 423 CTQQLRNVSLTLFAWLGKITLETYISQIHIWLRSNMPNGQPKWLLSFIPGYPLLNFMLAT 482
Query: 496 AIYVAVSHRLFELTNTLKIAFVPSRDNKRLSYNFVAGIAISVALYSLSFLIVGV 549
AIY+ +S+R+FELT LK AF+PSRDN RL NFVAGIAISV LY LS +++ +
Sbjct: 483 AIYLLISYRVFELTGVLKSAFIPSRDNNRLYQNFVAGIAISVCLYFLSIVLLKI 536
>Os05g0582100 Cas1p-like family protein
Length = 529
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/530 (68%), Positives = 423/530 (79%), Gaps = 6/530 (1%)
Query: 24 VSALLGFLWVFTAWAYAEVLYYRKNAASIKAHSDVNLAVMDSSSNKGEDQVMLLEEG-VQ 82
VS LLG V W YAE+L YRK+ K HSD NL ++ + K +D+ +LLE G +
Sbjct: 1 VSFLLGLFPVLIGWIYAEILEYRKSLLYGKVHSDANL---ENETMKEDDKAVLLEGGQSK 57
Query: 83 APVQKPVYASLTSQMFRLFLLDQALILENRLTLRAISEFGGHLLYFYICDRTNLLGESAK 142
+P K S + + R +D++ +LENR LRA++E G L+YFYICDRTN+ E+ K
Sbjct: 58 SPSTKLRNMSTKANLIRFITMDESFLLENRAVLRAMAEVGIILVYFYICDRTNIFPETKK 117
Query: 143 NYSRDMFLFLYFLLIIVAAMTSFKVHQDKSSFTGKSILYLNRHQTEEWKGWMQVLFLMYH 202
+Y+RD+FLFLY LLII +A+TS K H +KS+FTGKSILYLNRHQTEEWKGWMQVLFLMYH
Sbjct: 118 SYNRDLFLFLYILLIIASALTSLKKHNEKSAFTGKSILYLNRHQTEEWKGWMQVLFLMYH 177
Query: 203 YFNAKEIYNAIRVFIAAYVWMTGFGNFSYYYVRKDFSLARFAQMMWRLNFFVAFCCIVLN 262
YF A EIYNAIRVFIAAYVWMTGFGNFSYYY++KDFS+ARFAQMMWRLNFFVAFCCIVL+
Sbjct: 178 YFAATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSIARFAQMMWRLNFFVAFCCIVLD 237
Query: 263 NDYTLYYICPMHTLFTLMVYGALGILNKYNEIGSVMAIKFVACFLVVILIWEIPGVFEIV 322
NDY LYYICPMHTLFTLMVYG+LG+ NKYNE SVMAIK CFL VILIWEIPGVFE +
Sbjct: 238 NDYMLYYICPMHTLFTLMVYGSLGLFNKYNEKPSVMAIKIACCFLTVILIWEIPGVFEFL 297
Query: 323 WSPFTFLLGYTD--PSKPDLPRLHEWHFRSGLDRYIWIVGMIYAYYHPTVEKWMXXXXXX 380
W+PFTFLLGY D PSK +LP LHEWHFRSGLDRYIWI+GMIYAY+HP VE+WM
Sbjct: 298 WAPFTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMIYAYFHPNVERWMEKLEES 357
Query: 381 XXXXXXYIKALIVSIALTAGCLWYEYIYKLDKITYNKYHPYTSWIPITVYICLRNFTQEF 440
+IK IV+++LTAG LWYEYIY+LDKITYNKYHPYTSWIPITVYICLRN TQ+
Sbjct: 358 ETKVRLFIKGAIVTLSLTAGYLWYEYIYRLDKITYNKYHPYTSWIPITVYICLRNCTQQL 417
Query: 441 RCCSLTLFAWLGKITLETYISQFHIWLRSKVPNGQPKWLLTIIPNYPMLNFMLTTAIYVA 500
R SL LFAWLGKITLETYISQ HIWLRS PNGQPKWLL+ +P+YP+LNFMLTTAIY+
Sbjct: 418 RSASLALFAWLGKITLETYISQIHIWLRSSTPNGQPKWLLSFVPDYPLLNFMLTTAIYLL 477
Query: 501 VSHRLFELTNTLKIAFVPSRDNKRLSYNFVAGIAISVALYSLSFLIVGVA 550
+S+R+FE+T LK AF+PSRDN RL NF+AGIAIS LY S ++V +
Sbjct: 478 LSYRVFEITGVLKGAFIPSRDNNRLYQNFIAGIAISACLYFCSLILVKIT 527
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.141 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,430,703
Number of extensions: 619633
Number of successful extensions: 1569
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1565
Number of HSP's successfully gapped: 3
Length of query: 552
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 446
Effective length of database: 11,501,117
Effective search space: 5129498182
Effective search space used: 5129498182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 159 (65.9 bits)