Os05g0582100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cas1p-like family protein.
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Os05g0582100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cas1p-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.3 | 0.371 | 9.63 | -0.29 | 1.83 | -0.479 | 0.17 | -0.583 | -0.294 | 6.85 | 70 | 1442 | -- | -- |
| 62.99 | 0.37 | 9.65 | -0.359 | 1.81 | -0.502 | 0.139 | -- | -0.319 | 6.91 | 70 | 1364 | -- | -- |
| 62.37 | 0.368 | 9.63 | -0.287 | 1.83 | -0.48 | -- | -0.585 | -0.294 | 6.84 | 70.03 | 1442 | -- | -- |
| 63.07 | 0.37 | 9.64 | -0.365 | 1.82 | -0.518 | -- | -- | -0.319 | 6.91 | 70 | 1370 | -- | -- |
| 235.61 | 0.715 | 9.67 | -0.262 | -- | -0.56 | -- | -0.641 | -0.273 | -- | 70 | 1370 | -- | -- |
| 73.27 | 0.401 | 9.63 | -0.267 | 1.84 | -- | 0.216 | -- | -0.248 | 6.82 | -- | -- | -- | -- |
| 73.39 | 0.401 | 9.63 | -0.264 | 1.84 | -- | -- | -- | -0.248 | 6.82 | -- | -- | -- | -- |
| 236.14 | 0.716 | 9.68 | -0.361 | -- | -0.603 | -- | -- | -0.264 | -- | 70 | 1375 | -- | -- |
| 66.91 | 0.381 | 9.63 | -- | 1.82 | -0.499 | -- | -- | -0.309 | 6.95 | 70 | 1372 | -- | -- |
| 250.64 | 0.74 | 9.67 | -0.223 | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
| 75.22 | 0.406 | 9.62 | -- | 1.84 | -- | -- | -- | -0.219 | 6.83 | -- | -- | -- | -- |
| 239.55 | 0.721 | 9.68 | -- | -- | -0.561 | -- | -- | -0.274 | -- | 71 | 1360 | -- | -- |
| 251.96 | 0.741 | 9.66 | -- | -- | -- | -- | -- | -0.188 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.66 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 4 | 57.76 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 6 | 58.32 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 7 | 58.46 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 10 | 58.88 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 12 | 58.99 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 21 | 59.11 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 27 | 59.19 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 43 | 59.33 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 3 |
| 47 | 59.46 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 6 |
| 58 | 59.51 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 59 | 59.51 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 9 |
| 64 | 59.56 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 66 | 59.63 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 2 | 11 |
| 72 | 59.65 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 73 | 59.65 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 75 | 59.65 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 85 | 59.67 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 20 | 17 |
| 115 | 59.82 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 120 | 59.84 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 123 | 59.84 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 141 | 59.91 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 161 | 60.00 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 190 | 60.09 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 193 | 60.12 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 199 | 60.13 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 218 | 60.18 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 228 | 60.22 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 279 | 60.39 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 281 | 60.39 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 284 | 60.39 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 330 | 60.48 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 336 | 60.50 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 337 | 60.50 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 8 |
| 338 | 60.50 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 341 | 60.51 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 7 |
| 352 | 60.54 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 358 | 60.56 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 379 | 60.60 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 394 | 60.64 | humidity | 70.0 | 1440 | > th | dose independent | sin | 7 | NA |
| 409 | 60.67 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 412 | 60.68 | wind | 7.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 414 | 60.68 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 8 |
| 420 | 60.70 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 13 |
| 422 | 60.70 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 13 |
| 438 | 60.72 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 13 |
| 444 | 60.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 451 | 60.75 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 454 | 60.75 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 496 | 60.82 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 511 | 60.84 | wind | 1.0 | 43200 | > th | dose dependent | sin | 8 | NA |
| 514 | 60.84 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 11 |
| 542 | 60.86 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 9 |
| 563 | 60.90 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 575 | 60.92 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 578 | 60.93 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 582 | 60.93 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 4 |
| 586 | 60.94 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 593 | 60.95 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 600 | 60.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 13 |
| 630 | 60.99 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 696 | 61.06 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 746 | 61.11 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 794 | 61.16 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 807 | 61.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 815 | 61.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 822 | 61.18 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 839 | 61.20 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 858 | 61.22 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 875 | 61.23 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 895 | 61.25 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 904 | 61.26 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 907 | 61.26 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 8 |