BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0573300 Os05g0573300|AK070411
(608 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0573300 Similar to CTP synthase 1 (EC 6.3.4.2) (UTP--a... 1154 0.0
Os01g0654100 Similar to CTP synthase (EC 6.3.4.2) (UTP--amm... 956 0.0
Os12g0556600 CTP synthase family protein 712 0.0
Os05g0570400 702 0.0
Os05g0569700 CTP synthase family protein 583 e-167
Os01g0616900 Similar to CTP synthase (EC 6.3.4.2) (UTP--amm... 159 4e-39
>Os05g0573300 Similar to CTP synthase 1 (EC 6.3.4.2) (UTP--ammonia ligase 1) (CTP
synthetase 1)
Length = 608
Score = 1154 bits (2986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/608 (92%), Positives = 562/608 (92%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSIGVVLKDCGLRVTSIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASSIGVVLKDCGLRVTSIKIDPYLNTDAGTMSPFEH
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGVVLKDCGLRVTSIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 XXXXXXXXXXXXNYERFLDIKLTRDNNITTGKIYQAVIDKERRGDYLGKTVQVVPHITDE 120
NYERFLDIKLTRDNNITTGKIYQAVIDKERRGDYLGKTVQVVPHITDE
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQAVIDKERRGDYLGKTVQVVPHITDE 120
Query: 121 IQEWIERVAMNPVDGTDEPADVCVIELGGTIGDIESMPFIEALGQFSYRVGAGNFCXXXX 180
IQEWIERVAMNPVDGTDEPADVCVIELGGTIGDIESMPFIEALGQFSYRVGAGNFC
Sbjct: 121 IQEWIERVAMNPVDGTDEPADVCVIELGGTIGDIESMPFIEALGQFSYRVGAGNFCLVHV 180
Query: 181 XXXXXXXXXGEQKTKPTQHSVRGLRGLGLIPDILACRSTQPLEENVKVKLAQFCHVPISN 240
GEQKTKPTQHSVRGLRGLGLIPDILACRSTQPLEENVKVKLAQFCHVPISN
Sbjct: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGLGLIPDILACRSTQPLEENVKVKLAQFCHVPISN 240
Query: 241 IVNLHDVTNIWHIPLLLRDQKAHESILKVLDLQCVGKVPRAPKLTEWTERASKFDKLKTP 300
IVNLHDVTNIWHIPLLLRDQKAHESILKVLDLQCVGKVPRAPKLTEWTERASKFDKLKTP
Sbjct: 241 IVNLHDVTNIWHIPLLLRDQKAHESILKVLDLQCVGKVPRAPKLTEWTERASKFDKLKTP 300
Query: 301 VRIAMVGKYTGLSDSYLSVLKALLHASVALDRKLVVDWVPSCDLEDSAATETPDAYEKAW 360
VRIAMVGKYTGLSDSYLSVLKALLHASVALDRKLVVDWVPSCDLEDSAATETPDAYEKAW
Sbjct: 301 VRIAMVGKYTGLSDSYLSVLKALLHASVALDRKLVVDWVPSCDLEDSAATETPDAYEKAW 360
Query: 361 DLLKGAHGVLVPGGFGDRGVQGKILAAKYARENNVPYLGICLGMQIAVIEFARSVMKLRG 420
DLLKGAHGVLVPGGFGDRGVQGKILAAKYARENNVPYLGICLGMQIAVIEFARSVMKLRG
Sbjct: 361 DLLKGAHGVLVPGGFGDRGVQGKILAAKYARENNVPYLGICLGMQIAVIEFARSVMKLRG 420
Query: 421 ANSTEFDPATTTPCVIFMPEGSKTHMGATMRLGSRRTFFQANTCKSAKLYGNASYVDERH 480
ANSTEFDPATTTPCVIFMPEGSKTHMGATMRLGSRRTFFQANTCKSAKLYGNASYVDERH
Sbjct: 421 ANSTEFDPATTTPCVIFMPEGSKTHMGATMRLGSRRTFFQANTCKSAKLYGNASYVDERH 480
Query: 481 RHRYEVNPEMVPEFEKAGLSFVGRDESGTRMEIIELPTHRFFVGAQFHPEFKSRPGKPSP 540
RHRYEVNPEMVPEFEKAGLSFVGRDESGTRMEIIELPTHRFFVGAQFHPEFKSRPGKPSP
Sbjct: 481 RHRYEVNPEMVPEFEKAGLSFVGRDESGTRMEIIELPTHRFFVGAQFHPEFKSRPGKPSP 540
Query: 541 LFMGLIAASSGQLDHLLQQSCGVVSSPVRRGNYCNGATKQQKLYQNGHVKNGLVNGCYYA 600
LFMGLIAASSGQLDHLLQQSCGVVSSPVRRGNYCNGATKQQKLYQNGHVKNGLVNGCYYA
Sbjct: 541 LFMGLIAASSGQLDHLLQQSCGVVSSPVRRGNYCNGATKQQKLYQNGHVKNGLVNGCYYA 600
Query: 601 NGNSILHT 608
NGNSILHT
Sbjct: 601 NGNSILHT 608
>Os01g0654100 Similar to CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP
synthetase)
Length = 602
Score = 956 bits (2472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/609 (77%), Positives = 512/609 (84%), Gaps = 8/609 (1%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSIGVVLKDCGLRVTSIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASSIGVVLK CGLRVT+IKIDPYLNTDAGTMSPFEH
Sbjct: 1 MKYVLVTGGVVSGLGKGVTASSIGVVLKACGLRVTTIKIDPYLNTDAGTMSPFEHGEVFV 60
Query: 61 XXXXXXXXXXXXNYERFLDIKLTRDNNITTGKIYQAVIDKERRGDYLGKTVQVVPHITDE 120
NYERFLDIKLTRDNNITTGKIYQ+VI+KERRGDYLGKT+QVVPHITDE
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVINKERRGDYLGKTIQVVPHITDE 120
Query: 121 IQEWIERVAMNPVDGTDEPADVCVIELGGTIGDIESMPFIEALGQFSYRVGAGNFCXXXX 180
IQ+WIERVAMNPVDG + P DVCVIELGGTIGDIESMPFIEALGQFSYRVG GNFC
Sbjct: 121 IQDWIERVAMNPVDGKEGPPDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLVHV 180
Query: 181 XXXXXXXXXGEQKTKPTQHSVRGLRGLGLIPDILACRSTQPLEENVKVKLAQFCHVPISN 240
GEQKTKPTQHSVRGLRGLGL PDILACRST+PLEENVK KL+QFCHVP+S+
Sbjct: 181 SLVPVLNVVGEQKTKPTQHSVRGLRGLGLAPDILACRSTEPLEENVKAKLSQFCHVPVSS 240
Query: 241 IVNLHDVTNIWHIPLLLRDQKAHESILKVLDLQCVGKVPRAPKLTEWTERASKFDKLKTP 300
I+NLHDVTNIWHIPLLLRDQ+AHE+ILKVLDLQ VGKVPR PKL EWTERASKFDKLK
Sbjct: 241 IINLHDVTNIWHIPLLLRDQRAHEAILKVLDLQFVGKVPREPKLVEWTERASKFDKLKAT 300
Query: 301 VRIAMVGKYTGLSDSYLSVLKALLHASVALDRKLVVDWVPSCDLEDSAATETPDAYEKAW 360
V+IAMVGKYTGLSDSYLSVLKALLHASVA+ RKLVV+WVPSCDLEDSAA ETP+A++KAW
Sbjct: 301 VKIAMVGKYTGLSDSYLSVLKALLHASVAMGRKLVVEWVPSCDLEDSAAKETPEAHKKAW 360
Query: 361 DLLKGAHGVLVPGGFGDRGVQGKILAAKYARENNVPYLGICLGMQIAVIEFARSVMKLRG 420
LLKGA G+LVPGGFGDRGVQGKILAAKYARENNVPYLGICLGMQIAVI+FA S+MKL G
Sbjct: 361 KLLKGAEGILVPGGFGDRGVQGKILAAKYARENNVPYLGICLGMQIAVIDFACSIMKLPG 420
Query: 421 ANSTEFDPATTTPCVIFMPEGSKTHMGATMRLGSRRTFFQANTCKSAKLYGNASYVDERH 480
ANSTEFDP T +PCVIFMPEGSKTHMGATMRLGSRRT+F A CKSAKLYGNA +VDERH
Sbjct: 421 ANSTEFDPDTMSPCVIFMPEGSKTHMGATMRLGSRRTYFHATACKSAKLYGNARFVDERH 480
Query: 481 RHRYEVNPEMVPEFEKAGLSFVGRDESGTRMEIIELPTHRFFVGAQFHPEFKSRPGKPSP 540
RHRYEVNPEMVPEFEKAGLSFVG+DESG RMEIIELP+H+FF+G QFHPEFKSRPGKPSP
Sbjct: 481 RHRYEVNPEMVPEFEKAGLSFVGKDESGRRMEIIELPSHKFFIGVQFHPEFKSRPGKPSP 540
Query: 541 LFMGLIAASSGQLDHLLQQSCGVVS-SPVRRGNYCNGATKQQKLYQNGHVKNGLVNGCYY 599
LF+GLIAA+SGQL+ LLQ S +V+ +P+ R ++ +Y + LVNG Y+
Sbjct: 541 LFLGLIAAASGQLETLLQPSSNIVNPNPMPR-----FPIPKKTIYHAKKPLDSLVNG-YF 594
Query: 600 ANGNSILHT 608
ANGN ++HT
Sbjct: 595 ANGN-VIHT 602
>Os12g0556600 CTP synthase family protein
Length = 590
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/530 (64%), Positives = 406/530 (76%), Gaps = 3/530 (0%)
Query: 21 SSIGVVLKDCGLRVTSIKIDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFLDI 80
SS+GVVLK CGLRVT IKIDPYLNTDAGTMSPFEH NYERFLD+
Sbjct: 46 SSVGVVLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 105
Query: 81 KLTRDNNITTGKIYQAVIDKERRGDYLGKTVQVVPHITDEIQEWIERVAMNPVDGTDEPA 140
LTRDNNITTGKIYQ+VI+KER+GDYLGKTVQVVPH+TDEI++WI+ V+ PVDG PA
Sbjct: 106 TLTRDNNITTGKIYQSVIEKERKGDYLGKTVQVVPHVTDEIKQWIQSVSSVPVDGQTRPA 165
Query: 141 DVCVIELGGTIGDIESMPFIEALGQFSYRVGAGNFCXXXXXXXXXXXXXGEQKTKPTQHS 200
DVCVIELGGT+GDIESMPFIEAL Q S+ +G NFC GEQKTKPTQHS
Sbjct: 166 DVCVIELGGTVGDIESMPFIEALRQLSFSLGKDNFCLIHVSLVPVLGVVGEQKTKPTQHS 225
Query: 201 VRGLRGLGLIPDILACRSTQPLEENVKVKLAQFCHVPISNIVNLHDVTNIWHIPLLLRDQ 260
VR LR LGL PD+LACRS QPL +VK KL+QFCHVP+ NI+N+HDV N+WH+PL+LR+Q
Sbjct: 226 VRELRALGLTPDLLACRSAQPLIGSVKEKLSQFCHVPVENILNIHDVPNLWHVPLILRNQ 285
Query: 261 KAHESILKVLDLQCVGKVPRAPKLTEWTERASKFDKLKTPVRIAMVGKYTGLSDSYLSVL 320
K HE+I+K L+L G+ P+L +WT+ A +D LK V+IA+VGKYT L+DSYLSV+
Sbjct: 286 KVHEAIIKQLNL---GRSAGPPELRDWTQMAESYDDLKNSVKIALVGKYTNLTDSYLSVV 342
Query: 321 KALLHASVALDRKLVVDWVPSCDLEDSAATETPDAYEKAWDLLKGAHGVLVPGGFGDRGV 380
KALLHASVA K + W+ + DLED+ AT PDA+ KAW+ LKG+ +L+PGGFGDRG+
Sbjct: 343 KALLHASVACSLKPSIQWIAASDLEDATATSAPDAHAKAWETLKGSSCILIPGGFGDRGI 402
Query: 381 QGKILAAKYARENNVPYLGICLGMQIAVIEFARSVMKLRGANSTEFDPATTTPCVIFMPE 440
G ILAAKYAREN VPYLGICLGMQI+VIE +R+V+ L+ A+S EF+ T V++MPE
Sbjct: 403 SGMILAAKYARENKVPYLGICLGMQISVIEMSRNVLGLKDADSEEFNSETPFRVVMYMPE 462
Query: 441 GSKTHMGATMRLGSRRTFFQANTCKSAKLYGNASYVDERHRHRYEVNPEMVPEFEKAGLS 500
SKTHMG TMRLG RRTFF+ C ++KLYG+ +VDERHRHRYEVNP V E AGL
Sbjct: 463 VSKTHMGNTMRLGCRRTFFRRTDCLTSKLYGSPEHVDERHRHRYEVNPSFVAMLENAGLH 522
Query: 501 FVGRDESGTRMEIIELPTHRFFVGAQFHPEFKSRPGKPSPLFMGLIAASS 550
FVG DESG RME++EL H F++G QFHPEFKSRP +PSP F GLI A++
Sbjct: 523 FVGCDESGKRMEVVELQDHPFYIGVQFHPEFKSRPRRPSPPFTGLILAAA 572
>Os05g0570400
Length = 590
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/572 (61%), Positives = 406/572 (70%), Gaps = 21/572 (3%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSIGVVLKDCGLRVTSIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASSIGVVLK CGLRVTSIKIDPY N DAGT+SP EH
Sbjct: 1 MKYVVVMGGVISGLGKGVTASSIGVVLKACGLRVTSIKIDPYFNADAGTISPHEHGEVFV 60
Query: 61 XXXXXXXXXXXXNYERFLDIKLTRDNNITTGKIYQAVIDKERRGDYLGKTVQVVPHITDE 120
NYERFLDIKLTRD++IT GKI+ V+PHIT+E
Sbjct: 61 LDDGGEADLDLGNYERFLDIKLTRDHSITAGKIHH-----------------VIPHITNE 103
Query: 121 IQEWIERVAMNPVDGTDEPADVCVIELGGTIGDIESMPFIEALGQFSYRVGAGNFCXXXX 180
IQ+WIERVA+ PVDG +PADVC+IELGGTIGDIES FIEA QFSYRVGAGN C
Sbjct: 104 IQDWIERVAIVPVDGEVDPADVCIIELGGTIGDIESTQFIEAFSQFSYRVGAGNLCVVHV 163
Query: 181 XXXXXXXXXGEQKTKPTQHSVRGLRGLGLIPDILACRSTQPLEENVKVKLAQFCHVPISN 240
GEQKTKPTQ+S+R LR GL P+I+ACR T+ LE +VK KL+ FCHVP++N
Sbjct: 164 GLVPVLNVVGEQKTKPTQNSIRKLREYGLTPNIIACRCTKELERSVKEKLSLFCHVPVAN 223
Query: 241 IVNLHDVTNIWHIPLLLRDQKAHESILKVLDLQCVGKVPRAPKLTEWTERASKFDKLKTP 300
I L DV+NIW +PLLLRDQKAHE+ILKVL+L+ V P L EWT RA +D L+
Sbjct: 224 IFTLCDVSNIWRVPLLLRDQKAHEAILKVLNLESVAG---EPNLEEWTARADLYDTLQET 280
Query: 301 VRIAMVGKYTGLSDSYLSVLKALLHASVALDRKLVVDWVPSCDLEDSAATETPDAYEKAW 360
VRIAMVGKYTG+SD+YLSV+KALLHA +A RKLVVDWVPS DLEDS AT PDAY AW
Sbjct: 281 VRIAMVGKYTGVSDTYLSVMKALLHACIACGRKLVVDWVPSTDLEDSTATVAPDAYNTAW 340
Query: 361 DLLKGAHGVLVPGGFGDRGVQGKILAAKYARENNVPYLGICLGMQIAVIEFARSVMKLRG 420
LL+GA G+LVPGGFG+RGV+GKILA KYAREN+VP+LGICLGMQ+ +EFAR V+KL
Sbjct: 341 SLLRGADGILVPGGFGERGVEGKILAVKYARENDVPFLGICLGMQLTAVEFARHVLKLPD 400
Query: 421 ANSTEFDPATTTPCVIFMPEGSKTHMGATMRLGSRRTFFQANTCKSAKLYGNASYVDERH 480
ANSTEFD T PCV MPE S G TMR GS+R FF+ KSAKLYG+ S++DER
Sbjct: 401 ANSTEFDAKTENPCVTIMPECSNEGKGGTMRRGSKRIFFKVAGSKSAKLYGSVSHIDERF 460
Query: 481 RHRYEVNPEMVPEFEKAGLSFVGRDESGTRMEIIELPTHRFFVGAQFHPEFKSRPGKPSP 540
RHRY+VNP MV FE +GL VG D++G R++I+E+P HRFFVG QFHPEFKSRP KPS
Sbjct: 461 RHRYQVNPNMVQLFENSGLQVVGTDKTGERVQIVEIPNHRFFVGVQFHPEFKSRPSKPSA 520
Query: 541 LFMGLIAASSGQLDHLLQQ-SCGVVSSPVRRG 571
LF+GLIAAS GQLD LQ +C RRG
Sbjct: 521 LFVGLIAASCGQLDDALQDAACNHEPQQNRRG 552
>Os05g0569700 CTP synthase family protein
Length = 505
Score = 583 bits (1504), Expect = e-167, Method: Compositional matrix adjust.
Identities = 306/561 (54%), Positives = 362/561 (64%), Gaps = 78/561 (13%)
Query: 1 MKYXXXXXXXXXXXXXXXXASSIGVVLKDCGLRVTSIKIDPYLNTDAGTMSPFEHXXXXX 60
MKY ASSIGVVLK CGLRVTSIKIDPY N DAGT+SP EH
Sbjct: 1 MKYVVVMGGVISGLGKGVTASSIGVVLKACGLRVTSIKIDPYFNADAGTISPHEHGEVFV 60
Query: 61 XXXXXXXXXXXXNYERFLDIKLTRDNNITTGKIYQAVIDKERRGDYLGKTVQVVPHITDE 120
NYERFLDIKLTRD++IT GKI+ V+PHIT+E
Sbjct: 61 LDDGGEVDLDLGNYERFLDIKLTRDHSITAGKIHH-----------------VIPHITNE 103
Query: 121 IQEWIERVAMNPVDGTDEPADVCVIELGGTIGDIESMPFIEALGQFSYRVGAGNFCXXXX 180
IQ+WIER+AM PVDG +PADV +IELGGTIGDIES FIEA QFSYRVGAGN C
Sbjct: 104 IQDWIERIAMVPVDGEVDPADVYIIELGGTIGDIESTQFIEAFSQFSYRVGAGNLCVVH- 162
Query: 181 XXXXXXXXXGEQKTKPTQHSVRGLRGLGLIPDILACRSTQPLEENVKVKLAQFCHVPISN 240
+GL+P +L Q LE+NVK KL+ FCHVP++N
Sbjct: 163 --------------------------VGLVP-VLNVVGEQELEKNVKEKLSLFCHVPVAN 195
Query: 241 IVNLHDVTNIWHIPLLLRDQKAHESILKVLDLQCVGKVPRAPKLTEWTERASKFDKLKTP 300
I L+DV+NIW +PLLLRDQKA ++ILKVL+L+ V + P L EW RA +D L
Sbjct: 196 IFTLYDVSNIWRVPLLLRDQKADQAILKVLNLESVAE---EPNLEEWMARADLYDTLHET 252
Query: 301 VRIAMVGKYTGLSDSYLSVLKALLHASVALDRKLVVDWVPSCDLEDSAATETPDAYEKAW 360
VRIAMVGKYTG+SD+YLSV+KA PDAY AW
Sbjct: 253 VRIAMVGKYTGVSDTYLSVMKA------------------------------PDAYSTAW 282
Query: 361 DLLKGAHGVLVPGGFGDRGVQGKILAAKYARENNVPYLGICLGMQIAVIEFARSVMKLRG 420
LL+GA G+LVPGGFG+RGV+GKILAAK+AREN+VP+LGICLGMQ+AV+EFA V+KL
Sbjct: 283 SLLRGADGILVPGGFGERGVEGKILAAKHARENDVPFLGICLGMQLAVVEFACHVLKLPD 342
Query: 421 ANSTEFDPATTTPCVIFMPEGSKTHMGATMRLGSRRTFFQANTCKSAKLYGNASYVDERH 480
ANSTEFD T PCVI MPE S G TMR GS+RTFF+ KSAKLYG+ +++DER
Sbjct: 343 ANSTEFDAKTENPCVIIMPECSNEGKGGTMRRGSKRTFFKVANSKSAKLYGSVNHIDERF 402
Query: 481 RHRYEVNPEMVPEFEKAGLSFVGRDESGTRMEIIELPTHRFFVGAQFHPEFKSRPGKPSP 540
RHRY+VNP +V FE GL VG D++G ++I+E+P HRFFVG QFHPEF SRP KPS
Sbjct: 403 RHRYQVNPNVVQLFENNGLQVVGTDKTGEIVQIVEIPNHRFFVGVQFHPEFMSRPSKPSA 462
Query: 541 LFMGLIAASSGQLDHLLQQSC 561
LF+GLIAAS GQLD +LQ +
Sbjct: 463 LFVGLIAASCGQLDGVLQDAA 483
>Os01g0616900 Similar to CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP
synthetase)
Length = 124
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/102 (74%), Positives = 82/102 (80%)
Query: 157 MPFIEALGQFSYRVGAGNFCXXXXXXXXXXXXXGEQKTKPTQHSVRGLRGLGLIPDILAC 216
MPFIEALGQFSYRVG GNFC GEQKTKPTQHSVRGLRGLGL P+ILAC
Sbjct: 1 MPFIEALGQFSYRVGPGNFCLVHVSLVPVLNVVGEQKTKPTQHSVRGLRGLGLTPNILAC 60
Query: 217 RSTQPLEENVKVKLAQFCHVPISNIVNLHDVTNIWHIPLLLR 258
RST+ LEENVK KL+QFCHVP +NIV L+DV+NIW IPLLLR
Sbjct: 61 RSTKELEENVKEKLSQFCHVPAANIVTLYDVSNIWRIPLLLR 102
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,325,882
Number of extensions: 807205
Number of successful extensions: 1656
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1646
Number of HSP's successfully gapped: 8
Length of query: 608
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 501
Effective length of database: 11,448,903
Effective search space: 5735900403
Effective search space used: 5735900403
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)