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Os01g0654100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP synthetase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.49 (0.0366) R2 : 0.603
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.68 (0.0692) R2dE : 0.517 R2E : 0.516
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.679 (0.0771) R2dN8 : 0.0873 R2N8 : 0.0862
σ : 0.687
deviance : 217.54
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.282
memory length : 99
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
209.64 0.68 7.49 -0.11 0.511 1.37 -0.744 0.977 0.685 15.1 2.372 75 -- --
212.97 0.68 7.45 -0.122 0.472 1.36 0.0828 -- 0.697 14.7 2.406 75 -- --
210.42 0.676 7.5 -0.132 0.523 1.35 -- 0.649 0.666 14.9 2.41 75 -- --
212.42 0.679 7.49 -0.142 0.535 1.35 -- -- 0.672 14.8 2.4 75 -- --
215.72 0.684 7.49 -0.184 -- 1.67 -- 0.597 0.646 -- 2.41 92 -- --
242.62 0.73 7.44 -0.142 2.03 -- 0.674 -- 0.786 13 -- -- -- --
244.51 0.732 7.44 -0.118 2.02 -- -- -- 0.789 13 -- -- -- --
216.91 0.686 7.49 -0.161 -- 1.69 -- -- 0.663 -- 2.28 101 -- --
212.86 0.68 7.49 -- 0.535 1.35 -- -- 0.672 14.8 2.4 75 -- --
499.52 1.04 7.47 -0.194 -- -- -- -- 0.75 -- -- -- -- --
244.88 0.732 7.43 -- 2.03 -- -- -- 0.802 13 -- -- -- --
217.54 0.687 7.49 -- -- 1.68 -- -- 0.679 -- 2.282 99 -- --
500.51 1.04 7.46 -- -- -- -- -- 0.772 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 201.23 humidity 60.0 720 > th dose independent rect. 18 1
2 202.05 radiation 1.0 720 < th dose independent rect. 18 1
3 202.70 temperature 30.0 720 < th dose independent rect. 18 1
5 204.31 temperature 30.0 720 < th dose independent rect. 16 5
6 204.53 wind 5.0 43200 < th dose independent rect. 11 1
7 204.69 humidity 90.0 30 < th dose independent rect. 6 3
8 204.78 humidity 90.0 270 < th dose independent rect. 6 1
9 204.85 temperature 25.0 10 > th dose independent rect. 6 3
10 204.89 wind 5.0 43200 > th dose independent rect. 11 1
11 204.91 temperature 30.0 720 < th dose independent rect. 17 11
12 205.13 radiation 1.0 720 < th dose dependent rect. 18 1
13 205.26 radiation 10.0 30 > th dose independent sin 11 NA
15 205.57 humidity 80.0 43200 > th dose dependent rect. 20 5
16 205.73 temperature 10.0 30 > th dose dependent rect. 6 14
19 205.97 humidity 80.0 43200 > th dose dependent rect. 19 8
21 206.19 humidity 80.0 43200 > th dose dependent rect. 21 3
22 206.30 temperature 30.0 720 < th dose independent rect. 17 3
26 206.49 humidity 90.0 43200 > th dose independent rect. 2 1
34 206.80 temperature 20.0 43200 < th dose independent rect. 21 1
36 206.85 temperature 20.0 90 > th dose dependent rect. 23 10
39 206.87 temperature 20.0 43200 > th dose independent rect. 21 1
44 207.04 radiation 10.0 30 > th dose independent rect. 17 16
46 207.07 precipitation 0.1 720 < th dose independent rect. 21 10
47 207.07 precipitation 0.1 720 < th dose dependent rect. 21 10
49 207.10 precipitation 0.1 720 < th dose independent rect. 19 14
50 207.10 precipitation 0.1 720 < th dose dependent rect. 19 14
52 207.14 humidity 80.0 43200 > th dose dependent rect. 22 1
56 207.19 temperature 20.0 43200 > th dose independent rect. 18 4
61 207.23 temperature 20.0 30 > th dose dependent rect. 6 3
65 207.26 humidity 90.0 43200 < th dose independent rect. 22 7
75 207.38 humidity 90.0 43200 < th dose independent rect. 1 2
76 207.40 humidity 80.0 43200 > th dose dependent sin 12 NA
77 207.42 temperature 20.0 43200 > th dose independent rect. 12 10
83 207.50 atmosphere 1000.0 30 > th dose independent rect. 9 21
84 207.51 temperature 20.0 43200 < th dose independent rect. 12 10
90 207.56 humidity 90.0 43200 < th dose independent rect. 24 4
102 207.61 humidity 50.0 720 > th dose dependent rect. 18 1
109 207.64 humidity 80.0 43200 > th dose dependent rect. 19 14
122 207.72 temperature 30.0 14400 > th dose dependent rect. 15 1
127 207.75 humidity 90.0 43200 > th dose independent rect. 1 4
140 207.80 temperature 30.0 720 < th dose independent rect. 16 20
144 207.81 radiation 10.0 90 < th dose dependent sin 11 NA
163 207.89 temperature 10.0 720 > th dose dependent rect. 21 3
173 207.94 temperature 20.0 270 > th dose dependent rect. 6 1
212 208.15 temperature 15.0 30 > th dose independent rect. 9 21
214 208.16 wind 1.0 43200 < th dose dependent rect. 20 1
221 208.20 temperature 20.0 43200 < th dose dependent rect. 21 1
245 208.31 temperature 30.0 14400 > th dose independent rect. 16 1
247 208.32 radiation 10.0 30 > th dose independent rect. 6 3
277 208.39 humidity 50.0 720 > th dose independent rect. 16 5
305 208.47 temperature 20.0 43200 > th dose independent sin 19 NA
318 208.53 temperature 20.0 43200 < th dose independent sin 18 NA
322 208.53 humidity 70.0 43200 > th dose dependent rect. 9 19
325 208.54 temperature 10.0 720 > th dose dependent rect. 6 1
329 208.56 temperature 30.0 14400 > th dose independent rect. 15 3
337 208.58 temperature 30.0 14400 < th dose independent rect. 16 1
348 208.61 atmosphere 995.0 30 > th dose dependent rect. 9 21
383 208.77 temperature 30.0 14400 < th dose independent rect. 12 1
395 208.79 temperature 30.0 90 < th dose independent rect. 9 21
397 208.80 temperature 30.0 14400 > th dose independent rect. 12 1
498 209.02 temperature 25.0 43200 < th dose dependent rect. 13 1
503 209.03 temperature 30.0 14400 > th dose dependent sin 14 NA
513 209.05 temperature 30.0 14400 < th dose independent rect. 15 16
523 209.08 temperature 30.0 14400 < th dose independent rect. 15 7
524 209.08 temperature 30.0 14400 < th dose independent rect. 15 14
527 209.09 temperature 30.0 14400 < th dose independent rect. 15 5
550 209.09 humidity 70.0 43200 > th dose dependent rect. 21 22
554 209.10 temperature 30.0 14400 < th dose independent rect. 15 12
584 209.18 temperature 30.0 14400 > th dose independent rect. 11 7
611 209.25 radiation 10.0 14400 > th dose independent rect. 14 2
681 209.35 humidity 70.0 43200 > th dose dependent rect. 23 17
686 209.36 temperature 30.0 14400 > th dose independent rect. 15 22
687 209.36 temperature 30.0 14400 < th dose independent rect. 15 22
692 209.37 temperature 30.0 14400 < th dose independent rect. 11 7
699 209.39 temperature 30.0 14400 > th dose independent sin 14 NA
714 209.40 humidity 70.0 43200 > th dose dependent rect. 17 23
745 209.43 temperature 20.0 43200 < th dose dependent rect. 12 17
753 209.44 temperature 20.0 43200 < th dose dependent sin 15 NA
765 209.45 wind 3.0 43200 > th dose dependent rect. 11 1
792 209.48 radiation 1.0 43200 > th dose independent rect. 9 1
817 209.50 temperature 30.0 14400 < th dose independent rect. 11 20
833 209.52 temperature 30.0 14400 < th dose independent rect. 11 9
838 209.52 temperature 30.0 14400 < th dose independent rect. 11 16
955 209.61 temperature 30.0 14400 < th dose independent sin 15 NA
994 209.64 humidity 70.0 43200 > th dose dependent no NA NA