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Os01g0616900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP synthetase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0235) R2 : 0.651
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.76 (0.0603) R2dC : 0.651 R2C : 0.647
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.101 (0.0496) R2dN8 : 0.00412 R2N8 : 9.04e-05
σ : 0.444
deviance : 90.2
__
_____
C
peak time of C : 16.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.62 0.403 10.7 0.261 2 0.815 0.159 -0.715 0.165 17 82 748 -- --
74.76 0.403 10.7 0.206 2 0.81 0.328 -- 0.155 16.9 82.23 745 -- --
73.6 0.4 10.6 0.262 1.96 0.833 -- -0.769 0.164 17 82 777 -- --
75 0.403 10.7 0.212 1.96 0.807 -- -- 0.161 16.9 82.33 777 -- --
190.93 0.647 10.6 0.0828 -- -0.784 -- -0.251 0.0863 -- 76.25 2650 -- --
88.89 0.442 10.6 0.212 1.76 -- 0.191 -- 0.124 16.1 -- -- -- --
88.99 0.442 10.6 0.214 1.76 -- -- -- 0.125 16.1 -- -- -- --
189.43 0.644 10.6 0.0742 -- -0.803 -- -- 0.0547 -- 74 2658 -- --
76.13 0.406 10.7 -- 1.96 0.815 -- -- 0.14 16.9 82 777 -- --
257.92 0.75 10.6 0.143 -- -- -- -- 0.0782 -- -- -- -- --
90.2 0.444 10.7 -- 1.76 -- -- -- 0.101 16.1 -- -- -- --
189.58 0.643 10.6 -- -- -0.804 -- -- 0.0464 -- 74 2658 -- --
258.46 0.75 10.6 -- -- -- -- -- 0.0623 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.49 humidity 70.0 90 > th dose dependent rect. 21 6
3 65.78 temperature 15.0 270 > th dose independent rect. 14 15
6 66.48 humidity 60.0 90 > th dose dependent rect. 19 8
24 68.30 temperature 25.0 270 < th dose independent rect. 1 8
25 68.35 wind 5.0 270 < th dose independent rect. 1 5
26 68.38 humidity 70.0 270 > th dose dependent rect. 21 3
32 68.62 temperature 25.0 270 < th dose independent rect. 1 10
35 68.75 temperature 25.0 270 < th dose independent rect. 1 5
40 68.81 temperature 15.0 270 > th dose independent rect. 4 23
42 68.86 precipitation 0.1 270 < th dose independent rect. 1 5
43 68.86 precipitation 0.1 270 < th dose dependent rect. 1 5
44 68.91 temperature 10.0 270 > th dose dependent rect. 6 7
46 68.96 temperature 25.0 270 < th dose independent rect. 2 3
50 68.97 humidity 80.0 90 > th dose independent rect. 21 6
53 69.01 wind 5.0 270 < th dose independent rect. 2 3
54 69.04 precipitation 0.1 270 < th dose independent rect. 3 2
56 69.04 precipitation 0.1 270 < th dose dependent rect. 3 2
61 69.16 temperature 15.0 90 > th dose independent rect. 3 18
62 69.18 temperature 15.0 270 > th dose independent rect. 24 23
66 69.30 wind 9.0 90 < th dose dependent rect. 21 6
71 69.33 precipitation 0.1 90 < th dose independent rect. 3 18
72 69.33 precipitation 0.1 90 < th dose dependent rect. 3 18
77 69.45 precipitation 0.1 270 < th dose independent rect. 1 18
78 69.45 wind 7.0 270 < th dose independent rect. 6 19
79 69.45 precipitation 0.1 270 < th dose dependent rect. 1 18
81 69.51 wind 7.0 90 < th dose dependent rect. 3 5
84 69.52 wind 9.0 90 < th dose independent rect. 21 6
88 69.53 temperature 10.0 90 > th dose independent rect. 21 6
89 69.53 temperature 30.0 90 < th dose independent rect. 21 6
90 69.53 humidity 50.0 90 > th dose independent rect. 21 6
93 69.53 atmosphere 995.0 90 > th dose independent rect. 21 6
94 69.53 radiation 1.0 90 < th dose independent rect. 21 6
100 69.53 atmosphere 1015.0 90 < th dose independent rect. 3 18
101 69.53 radiation 1.0 90 < th dose dependent rect. 21 6
106 69.53 wind 9.0 90 < th dose dependent rect. 19 8
108 69.56 precipitation 0.1 90 < th dose independent rect. 21 6
109 69.56 precipitation 0.1 90 < th dose dependent rect. 21 6
113 69.65 wind 5.0 90 < th dose independent rect. 3 5
121 69.78 wind 7.0 10 < th dose dependent rect. 3 5
128 69.82 wind 7.0 270 < th dose independent rect. 5 21
131 69.84 precipitation 0.1 270 < th dose independent rect. 14 16
132 69.84 wind 9.0 270 < th dose dependent rect. 3 2
133 69.84 precipitation 0.1 270 < th dose dependent rect. 14 16
134 69.86 precipitation 0.1 90 < th dose independent rect. 3 5
136 69.86 precipitation 0.1 90 < th dose dependent rect. 3 5
142 69.90 temperature 10.0 270 > th dose independent rect. 1 5
145 69.90 humidity 50.0 270 > th dose independent rect. 1 5
148 69.90 atmosphere 995.0 270 > th dose independent rect. 1 5
149 69.90 atmosphere 1015.0 270 < th dose independent rect. 1 5
150 69.90 radiation 20.0 270 < th dose independent rect. 1 5
153 69.90 wind 7.0 90 < th dose independent rect. 8 19
154 69.90 temperature 10.0 270 > th dose independent rect. 6 19
159 69.95 wind 9.0 270 < th dose dependent rect. 1 5
178 70.07 radiation 40.0 270 < th dose dependent rect. 1 5
179 70.08 temperature 15.0 270 > th dose independent rect. 1 18
181 70.10 humidity 50.0 270 > th dose independent rect. 6 8
186 70.13 wind 9.0 90 < th dose independent rect. 3 18
193 70.18 wind 9.0 270 < th dose dependent rect. 6 19
194 70.20 wind 1.0 270 > th dose independent rect. 3 1
228 70.39 temperature 10.0 270 > th dose independent rect. 2 3
231 70.39 humidity 50.0 270 > th dose independent rect. 2 3
234 70.39 atmosphere 995.0 270 > th dose independent rect. 2 3
235 70.39 atmosphere 1010.0 270 < th dose independent rect. 2 3
237 70.39 radiation 20.0 270 < th dose independent rect. 2 3
244 70.40 radiation 40.0 270 < th dose dependent rect. 2 3
249 70.41 wind 9.0 270 < th dose independent rect. 6 8
255 70.42 wind 9.0 270 < th dose independent rect. 19 6
256 70.42 temperature 10.0 270 > th dose independent rect. 19 6
257 70.42 temperature 30.0 270 < th dose independent rect. 19 6
258 70.42 humidity 50.0 270 > th dose independent rect. 19 6
260 70.42 atmosphere 995.0 270 > th dose independent rect. 19 6
261 70.42 radiation 1.0 270 < th dose independent rect. 19 6
267 70.42 atmosphere 1015.0 270 < th dose independent rect. 1 18
270 70.42 radiation 1.0 270 < th dose dependent rect. 19 6
279 70.43 humidity 80.0 90 > th dose dependent rect. 11 16
280 70.44 radiation 1.0 270 < th dose independent rect. 2 3
289 70.50 precipitation 0.1 270 < th dose independent rect. 6 19
291 70.50 precipitation 0.1 270 < th dose dependent rect. 6 19
295 70.54 temperature 10.0 270 > th dose independent rect. 5 9
296 70.54 atmosphere 995.0 270 > th dose independent rect. 5 9
297 70.54 atmosphere 1015.0 270 < th dose independent rect. 5 9
313 70.59 radiation 40.0 90 < th dose dependent rect. 3 6
330 70.61 temperature 10.0 90 > th dose independent rect. 3 5
333 70.61 humidity 50.0 90 > th dose independent rect. 3 5
335 70.61 atmosphere 995.0 90 > th dose independent rect. 3 5
336 70.61 atmosphere 1015.0 90 < th dose independent rect. 3 5
337 70.61 temperature 10.0 90 > th dose independent rect. 8 19
341 70.63 precipitation 0.1 10 < th dose independent rect. 3 5
342 70.63 precipitation 0.1 10 < th dose dependent rect. 3 5
343 70.64 radiation 40.0 90 < th dose independent rect. 3 5
352 70.68 precipitation 0.1 270 < th dose independent rect. 6 8
353 70.68 precipitation 0.1 270 < th dose dependent rect. 6 8
356 70.70 radiation 1.0 270 < th dose dependent rect. 5 21
361 70.73 precipitation 0.1 270 < th dose independent rect. 19 6
362 70.73 precipitation 0.1 270 < th dose dependent rect. 19 6
366 70.75 radiation 40.0 270 < th dose independent rect. 14 16
369 70.78 temperature 15.0 90 > th dose independent rect. 3 16
372 70.80 wind 9.0 270 < th dose independent rect. 14 16
376 70.81 radiation 30.0 270 < th dose dependent rect. 1 8
390 70.85 wind 9.0 270 < th dose independent rect. 1 18
393 70.88 humidity 80.0 720 < th dose dependent rect. 20 1
397 70.94 precipitation 0.1 90 < th dose independent rect. 19 8
398 70.94 precipitation 0.1 90 < th dose dependent rect. 19 8
399 70.95 radiation 1.0 270 < th dose dependent rect. 7 18
403 70.97 wind 5.0 10 < th dose independent rect. 3 5
405 70.97 radiation 40.0 90 < th dose independent rect. 3 18
435 71.00 precipitation 0.1 270 < th dose independent rect. 24 21
442 71.00 precipitation 0.1 270 < th dose dependent rect. 24 21
448 71.03 atmosphere 1015.0 1440 < th dose independent rect. 3 6
451 71.04 precipitation 0.1 90 < th dose independent rect. 8 19
455 71.04 precipitation 0.1 90 < th dose dependent rect. 8 19
473 71.10 temperature 30.0 90 < th dose independent rect. 19 8
483 71.10 atmosphere 1015.0 90 < th dose independent rect. 3 16
485 71.10 atmosphere 1015.0 90 < th dose dependent rect. 3 4
503 71.15 atmosphere 1015.0 270 < th dose dependent rect. 3 2
515 71.21 atmosphere 1010.0 270 < th dose independent rect. 14 16
617 71.42 atmosphere 995.0 90 > th dose independent rect. 8 19
635 71.43 wind 9.0 90 < th dose dependent rect. 8 19
644 71.45 precipitation 0.1 270 < th dose independent rect. 5 21
646 71.45 humidity 80.0 90 > th dose dependent rect. 7 20
648 71.45 precipitation 0.1 270 < th dose dependent rect. 5 21
652 71.49 atmosphere 995.0 270 > th dose independent rect. 1 18
662 71.51 humidity 80.0 270 > th dose independent rect. 21 3
663 71.51 wind 1.0 270 > th dose independent rect. 1 5
665 71.53 atmosphere 995.0 90 > th dose independent rect. 3 18
688 71.58 temperature 15.0 270 > th dose independent rect. 11 10
689 71.58 temperature 30.0 270 < th dose dependent rect. 2 3
704 71.62 wind 9.0 90 < th dose independent rect. 3 16
705 71.62 radiation 40.0 90 < th dose dependent rect. 3 8
708 71.63 atmosphere 995.0 270 > th dose independent rect. 6 19
747 71.74 precipitation 0.1 10 < th dose independent rect. 8 19
748 71.74 precipitation 0.1 10 < th dose dependent rect. 8 19
751 71.75 temperature 15.0 10 > th dose independent rect. 16 16
765 71.78 precipitation 0.1 10 < th dose independent rect. 3 18
766 71.78 precipitation 0.1 10 < th dose dependent rect. 3 18
771 71.81 temperature 25.0 90 < th dose independent rect. 3 8
781 71.84 radiation 1.0 270 < th dose independent rect. 8 17
795 71.86 temperature 30.0 90 < th dose dependent rect. 3 6
800 71.88 humidity 50.0 270 > th dose dependent rect. 2 3
864 71.94 temperature 10.0 10 > th dose independent rect. 3 5
866 71.94 temperature 30.0 10 < th dose independent rect. 3 5
867 71.94 humidity 50.0 10 > th dose independent rect. 3 5
869 71.94 atmosphere 995.0 10 > th dose independent rect. 3 5
870 71.94 atmosphere 1015.0 10 < th dose independent rect. 3 5
874 71.94 temperature 10.0 10 > th dose independent rect. 8 19
879 71.95 atmosphere 1015.0 270 < th dose dependent rect. 1 5
924 71.99 humidity 90.0 720 < th dose dependent rect. 18 10
927 72.00 humidity 90.0 720 < th dose dependent rect. 18 12
945 72.02 humidity 80.0 720 < th dose dependent rect. 19 5
951 72.04 atmosphere 995.0 90 > th dose dependent rect. 21 6
989 72.11 radiation 40.0 10 < th dose independent rect. 3 5
997 72.12 atmosphere 995.0 270 > th dose independent rect. 14 16