BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0616900 Os01g0616900|003-129-E09
(124 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0616900 Similar to CTP synthase (EC 6.3.4.2) (UTP--amm... 226 4e-60
Os01g0654100 Similar to CTP synthase (EC 6.3.4.2) (UTP--amm... 162 7e-41
Os05g0573300 Similar to CTP synthase 1 (EC 6.3.4.2) (UTP--a... 159 6e-40
Os05g0570400 140 2e-34
Os12g0556600 CTP synthase family protein 129 7e-31
Os05g0569700 CTP synthase family protein 95 1e-20
>Os01g0616900 Similar to CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP
synthetase)
Length = 124
Score = 226 bits (575), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 111/124 (89%), Positives = 111/124 (89%)
Query: 1 MPFIEALGQFSYRVGPGNFCXXXXXXXXXXXXXGEQKTKPTQHSVRGLRGLGLTPNILAC 60
MPFIEALGQFSYRVGPGNFC GEQKTKPTQHSVRGLRGLGLTPNILAC
Sbjct: 1 MPFIEALGQFSYRVGPGNFCLVHVSLVPVLNVVGEQKTKPTQHSVRGLRGLGLTPNILAC 60
Query: 61 RSTKELEENVKEKLSQFCHVPAANIVTLYDVSNIWRIPLLLRVRHISLFPLTKKFFFGVS 120
RSTKELEENVKEKLSQFCHVPAANIVTLYDVSNIWRIPLLLRVRHISLFPLTKKFFFGVS
Sbjct: 61 RSTKELEENVKEKLSQFCHVPAANIVTLYDVSNIWRIPLLLRVRHISLFPLTKKFFFGVS 120
Query: 121 HILF 124
HILF
Sbjct: 121 HILF 124
>Os01g0654100 Similar to CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP
synthetase)
Length = 602
Score = 162 bits (409), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 76/102 (74%), Positives = 83/102 (81%)
Query: 1 MPFIEALGQFSYRVGPGNFCXXXXXXXXXXXXXGEQKTKPTQHSVRGLRGLGLTPNILAC 60
MPFIEALGQFSYRVGPGNFC GEQKTKPTQHSVRGLRGLGL P+ILAC
Sbjct: 157 MPFIEALGQFSYRVGPGNFCLVHVSLVPVLNVVGEQKTKPTQHSVRGLRGLGLAPDILAC 216
Query: 61 RSTKELEENVKEKLSQFCHVPAANIVTLYDVSNIWRIPLLLR 102
RST+ LEENVK KLSQFCHVP ++I+ L+DV+NIW IPLLLR
Sbjct: 217 RSTEPLEENVKAKLSQFCHVPVSSIINLHDVTNIWHIPLLLR 258
>Os05g0573300 Similar to CTP synthase 1 (EC 6.3.4.2) (UTP--ammonia ligase 1) (CTP
synthetase 1)
Length = 608
Score = 159 bits (401), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 76/102 (74%), Positives = 82/102 (80%)
Query: 1 MPFIEALGQFSYRVGPGNFCXXXXXXXXXXXXXGEQKTKPTQHSVRGLRGLGLTPNILAC 60
MPFIEALGQFSYRVG GNFC GEQKTKPTQHSVRGLRGLGL P+ILAC
Sbjct: 157 MPFIEALGQFSYRVGAGNFCLVHVSLVPVLNVVGEQKTKPTQHSVRGLRGLGLIPDILAC 216
Query: 61 RSTKELEENVKEKLSQFCHVPAANIVTLYDVSNIWRIPLLLR 102
RST+ LEENVK KL+QFCHVP +NIV L+DV+NIW IPLLLR
Sbjct: 217 RSTQPLEENVKVKLAQFCHVPISNIVNLHDVTNIWHIPLLLR 258
>Os05g0570400
Length = 590
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/100 (69%), Positives = 74/100 (74%)
Query: 3 FIEALGQFSYRVGPGNFCXXXXXXXXXXXXXGEQKTKPTQHSVRGLRGLGLTPNILACRS 62
FIEA QFSYRVG GN C GEQKTKPTQ+S+R LR GLTPNI+ACR
Sbjct: 142 FIEAFSQFSYRVGAGNLCVVHVGLVPVLNVVGEQKTKPTQNSIRKLREYGLTPNIIACRC 201
Query: 63 TKELEENVKEKLSQFCHVPAANIVTLYDVSNIWRIPLLLR 102
TKELE +VKEKLS FCHVP ANI TL DVSNIWR+PLLLR
Sbjct: 202 TKELERSVKEKLSLFCHVPVANIFTLCDVSNIWRVPLLLR 241
>Os12g0556600 CTP synthase family protein
Length = 590
Score = 129 bits (323), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 1 MPFIEALGQFSYRVGPGNFCXXXXXXXXXXXXXGEQKTKPTQHSVRGLRGLGLTPNILAC 60
MPFIEAL Q S+ +G NFC GEQKTKPTQHSVR LR LGLTP++LAC
Sbjct: 182 MPFIEALRQLSFSLGKDNFCLIHVSLVPVLGVVGEQKTKPTQHSVRELRALGLTPDLLAC 241
Query: 61 RSTKELEENVKEKLSQFCHVPAANIVTLYDVSNIWRIPLLLRVRHI 106
RS + L +VKEKLSQFCHVP NI+ ++DV N+W +PL+LR + +
Sbjct: 242 RSAQPLIGSVKEKLSQFCHVPVENILNIHDVPNLWHVPLILRNQKV 287
>Os05g0569700 CTP synthase family protein
Length = 505
Score = 95.1 bits (235), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/100 (51%), Positives = 56/100 (56%), Gaps = 28/100 (28%)
Query: 3 FIEALGQFSYRVGPGNFCXXXXXXXXXXXXXGEQKTKPTQHSVRGLRGLGLTPNILACRS 62
FIEA QFSYRVG GN C +GL P +L
Sbjct: 142 FIEAFSQFSYRVGAGNLCVVH---------------------------VGLVP-VLNVVG 173
Query: 63 TKELEENVKEKLSQFCHVPAANIVTLYDVSNIWRIPLLLR 102
+ELE+NVKEKLS FCHVP ANI TLYDVSNIWR+PLLLR
Sbjct: 174 EQELEKNVKEKLSLFCHVPVANIFTLYDVSNIWRVPLLLR 213
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.142 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,678,150
Number of extensions: 118408
Number of successful extensions: 243
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 6
Length of query: 124
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 36
Effective length of database: 12,440,969
Effective search space: 447874884
Effective search space used: 447874884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)