BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0568600 Os05g0568600|AK063781
(231 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0568600 Protein of unknown function DUF1645 family pro... 330 4e-91
Os05g0568800 Protein of unknown function DUF1645 family pro... 108 3e-24
Os01g0639600 Protein of unknown function DUF1645 family pro... 77 1e-14
Os05g0578100 Protein of unknown function DUF1645 family pro... 67 9e-12
>Os05g0568600 Protein of unknown function DUF1645 family protein
Length = 231
Score = 330 bits (847), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 170/207 (82%), Positives = 170/207 (82%)
Query: 25 LESDEEDFTFXXXXXVTCVVGGGRIGAVVYPVFGRPRSPPPVQEVEEPDTATVRVPLGQL 84
LESDEEDFTF VTCVVGGGRIGAVVYPVFGRPRSPPPVQEVEEPDTATVRVPLGQL
Sbjct: 25 LESDEEDFTFAAAAAVTCVVGGGRIGAVVYPVFGRPRSPPPVQEVEEPDTATVRVPLGQL 84
Query: 85 LLEERASAPPSGEQADEDGVLDGVPAETYCLWSPGSPAPAVSNSPARCQKSGSTGSVLRW 144
LLEERASAPPSGEQADEDGVLDGVPAETYCLWSPGSPAPAVSNSPARCQKSGSTGSVLRW
Sbjct: 85 LLEERASAPPSGEQADEDGVLDGVPAETYCLWSPGSPAPAVSNSPARCQKSGSTGSVLRW 144
Query: 145 RQRLIGRSHSDGKEKFVFLSSGSDVRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 204
RQRLIGRSHSDGKEKFVFLSSGSDVRSK
Sbjct: 145 RQRLIGRSHSDGKEKFVFLSSGSDVRSKGRTTTTSRGDAGGRGGGWRYYASGGGNGGGRR 204
Query: 205 PSFLPYKQDLVGLFANAGAFRRSYHPF 231
PSFLPYKQDLVGLFANAGAFRRSYHPF
Sbjct: 205 PSFLPYKQDLVGLFANAGAFRRSYHPF 231
>Os05g0568800 Protein of unknown function DUF1645 family protein
Length = 229
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 117/219 (53%), Gaps = 17/219 (7%)
Query: 26 ESDEEDFTFXXXXXVTCVVGGGRIGAVVYPVFGRPRSPPPVQEV--EEPDTATVRVPLGQ 83
+ D FTF V + GG +G +YPVFGRPRSPPP + P+ A+ R+PL +
Sbjct: 15 DDDGGGFTFAE---VPPLAGGRCVGPPLYPVFGRPRSPPPTPPPHRQAPEKAS-RLPLWR 70
Query: 84 LLLEERASAPPSGEQAD------EDGVLDGVPAETYCLWSPGSPA--PAVSNSPARCQKS 135
L+ + PP D LDG PAE+ L+ P PA A + SPARC+KS
Sbjct: 71 FLMVDHGPPPPPPPTTQPAADDDLDLDLDGEPAESTFLYCPLCPALPVAAAASPARCRKS 130
Query: 136 GSTGS-VLRWRQRLIGRSHSDGKEKFVFLSSGSDVRSKXXXXXXXXXXXX--XXXXXXXX 192
GSTGS +LRWRQR IGRSHSDGKEKFVFL++ S
Sbjct: 131 GSTGSSLLRWRQRSIGRSHSDGKEKFVFLNASSSSSGSEHKGGRGGEVGHDGALSYYANG 190
Query: 193 XXXXXXXXXXXXPSFLPYKQDLVGLFANAGAFRRSYHPF 231
SFLPY+QD+VGLFANA AFRRSYHPF
Sbjct: 191 GSRGGGGGGGRRRSFLPYRQDIVGLFANATAFRRSYHPF 229
>Os01g0639600 Protein of unknown function DUF1645 family protein
Length = 248
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 93/206 (45%), Gaps = 25/206 (12%)
Query: 47 GRIGAVVYPVFGRPRSPPPVQEVEEPDTATVRVPLGQLLLEE----RASAPPSGEQADED 102
GRI A YPVFGR V PLG+L LEE + S + +
Sbjct: 47 GRIRAF-YPVFGRVLDDVAVTPAAAAAEERR-PPLGRLFLEEGRTSSVGSTSSSSSSTDI 104
Query: 103 GVLDGVPAETYCLWSPGSPAPAVSNSPARCQKSGSTGSVLRWR---QRLIGRSHSDGKEK 159
LDGV ++YC+W PGS + + P R KSGSTGS+ RWR + ++GRSHSDGKEK
Sbjct: 105 AELDGVSPDSYCVWVPGSSPASSPSRPPR--KSGSTGSIARWRRISELVVGRSHSDGKEK 162
Query: 160 FVFLSS-GSDVR------------SKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPS 206
F FLS+ S R + +
Sbjct: 163 FRFLSAPSSPARDHPKPKPTTKGGAAAATKLHTELDTIAAGHRLSYSPNHKAHGGATRRT 222
Query: 207 FLPYKQDLVGLFANAGAFRRSYH-PF 231
FLPY+QDL+G+FAN R++H PF
Sbjct: 223 FLPYRQDLMGIFANVNGLSRTHHRPF 248
>Os05g0578100 Protein of unknown function DUF1645 family protein
Length = 306
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 64/103 (62%), Gaps = 16/103 (15%)
Query: 77 VRVPLGQLLLEE-----------RASAPPSGEQADEDGVLDGVPAETYCLWS--PGSPAP 123
R PLG+L LEE +S+ S A ++G LDG P E+YCLW+ G+ +
Sbjct: 107 TRGPLGRLFLEESRGSFDRWSTSTSSSSSSSAPASDEGGLDGAPPESYCLWTPGAGAGSA 166
Query: 124 AVSNSPARCQKSGSTGSVLRWR---QRLIGRSHSDGKEKFVFL 163
+ S SP +KSGSTGS+ RWR + ++GRSHSDGKEKF+FL
Sbjct: 167 SASASPRPPRKSGSTGSMARWRRISELVVGRSHSDGKEKFLFL 209
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,433,313
Number of extensions: 338647
Number of successful extensions: 1340
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1334
Number of HSP's successfully gapped: 4
Length of query: 231
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 133
Effective length of database: 11,918,829
Effective search space: 1585204257
Effective search space used: 1585204257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)