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Os05g0578100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1645 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.3 (0.0184) R2 : 0.492
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.733 (0.0481) R2dC : 0.26 R2C : 0.176
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.573 (0.0387) R2dN8 : 0.316 R2N8 : 0.232
σ : 0.347
deviance : 54.95
__
_____
C
peak time of C : 18.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.11 0.316 13.3 0.444 0.813 0.441 0.173 0.318 0.624 15.9 0.629 10 -- --
44.37 0.313 13.3 0.464 0.84 0.513 -0.101 -- 0.636 15.5 0.629 10 -- --
44.12 0.312 13.3 0.45 0.818 0.478 -- 0.225 0.63 15.6 0.6298 10 -- --
44.39 0.312 13.3 0.461 0.835 0.505 -- -- 0.635 15.5 0.629 10 -- --
73.4 0.401 13.3 0.405 -- 0.213 -- 0.183 0.605 -- 0.6298 10 -- --
49.85 0.331 13.3 0.424 0.736 -- 0.453 -- 0.618 18.5 -- -- -- --
50.35 0.332 13.3 0.418 0.738 -- -- -- 0.619 18.4 -- -- -- --
73.63 0.401 13.3 0.409 -- 0.212 -- -- 0.606 -- 0.63 10 -- --
49.85 0.331 13.3 -- 0.789 0.443 -- -- 0.58 15.8 0.8704 5 -- --
78.66 0.414 13.3 0.399 -- -- -- -- 0.604 -- -- -- -- --
54.95 0.347 13.3 -- 0.733 -- -- -- 0.573 18.4 -- -- -- --
78.02 0.413 13.3 -- -- 0.208 -- -- 0.561 -- 1.025 2 -- --
82.86 0.425 13.3 -- -- -- -- -- 0.559 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.88 radiation 1.0 10 < th dose dependent sin 12 NA
3 44.33 radiation 1.0 10 < th dose independent sin 12 NA
5 44.54 temperature 25.0 270 < th dose independent rect. 22 10
14 44.82 wind 3.0 1440 < th dose independent rect. 5 1
15 44.82 temperature 15.0 10 > th dose dependent rect. 22 7
17 44.87 humidity 80.0 14400 > th dose independent rect. 22 1
18 44.88 wind 7.0 4320 < th dose independent rect. 23 4
19 44.89 atmosphere 995.0 10 > th dose dependent rect. 18 11
21 44.93 radiation 1.0 10 > th dose independent sin 12 NA
22 44.93 wind 9.0 14400 > th dose dependent rect. 15 6
26 45.00 radiation 1.0 10 < th dose dependent rect. 18 23
27 45.01 wind 9.0 14400 > th dose dependent rect. 16 3
30 45.02 humidity 90.0 270 < th dose independent rect. 7 5
33 45.05 radiation 1.0 10 > th dose independent rect. 12 23
35 45.07 wind 3.0 1440 > th dose independent rect. 5 1
36 45.07 wind 9.0 14400 > th dose independent rect. 17 1
37 45.07 radiation 40.0 270 < th dose dependent rect. 9 17
39 45.09 temperature 10.0 270 > th dose dependent rect. 21 15
40 45.11 radiation 1.0 10 > th dose independent rect. 14 21
43 45.13 wind 9.0 14400 < th dose independent rect. 17 1
44 45.14 atmosphere 995.0 90 > th dose dependent rect. 18 10
47 45.19 temperature 15.0 270 > th dose independent rect. 22 14
48 45.19 radiation 1.0 10 < th dose dependent rect. 6 23
49 45.20 temperature 25.0 270 < th dose independent rect. 1 7
53 45.21 wind 9.0 43200 > th dose independent rect. 15 1
57 45.22 wind 1.0 1440 > th dose dependent rect. 5 1
62 45.25 radiation 1.0 10 < th dose dependent no NA NA
64 45.25 radiation 1.0 10 < th dose dependent rect. 11 21
70 45.25 radiation 1.0 10 < th dose dependent rect. 13 23
71 45.25 radiation 1.0 10 < th dose dependent rect. 15 23
76 45.28 wind 7.0 270 < th dose independent rect. 22 14
78 45.28 radiation 1.0 10 < th dose dependent rect. 11 18
89 45.31 wind 7.0 270 < th dose independent rect. 7 5
92 45.32 wind 9.0 1440 < th dose dependent rect. 5 1
94 45.33 temperature 15.0 270 > th dose independent rect. 7 5
96 45.33 radiation 20.0 90 < th dose dependent rect. 9 19
101 45.34 humidity 70.0 720 > th dose independent rect. 17 1
102 45.34 temperature 20.0 270 > th dose independent rect. 9 3
106 45.35 radiation 30.0 270 < th dose independent rect. 9 16
108 45.37 temperature 20.0 90 > th dose independent rect. 9 5
110 45.37 temperature 15.0 90 > th dose dependent rect. 22 6
118 45.39 wind 9.0 270 < th dose dependent rect. 7 6
120 45.39 radiation 1.0 10 < th dose dependent rect. 15 21
127 45.40 atmosphere 995.0 270 > th dose independent rect. 17 9
128 45.40 wind 1.0 4320 < th dose dependent rect. 6 2
150 45.44 radiation 1.0 10 < th dose dependent rect. 13 19
160 45.45 humidity 60.0 4320 < th dose dependent rect. 15 1
161 45.45 radiation 1.0 10 < th dose dependent rect. 13 16
172 45.48 temperature 15.0 270 > th dose independent rect. 7 18
176 45.49 humidity 70.0 270 > th dose independent rect. 17 9
187 45.50 wind 3.0 1440 > th dose independent rect. 2 16
188 45.50 temperature 10.0 10 > th dose dependent rect. 20 9
193 45.51 radiation 1.0 270 > th dose independent rect. 7 5
198 45.52 temperature 20.0 10 > th dose independent rect. 11 1
206 45.53 wind 7.0 4320 > th dose independent rect. 24 3
212 45.53 wind 5.0 1440 < th dose dependent rect. 3 15
216 45.54 wind 3.0 1440 < th dose independent rect. 2 16
218 45.54 temperature 15.0 10 > th dose dependent rect. 14 8
219 45.54 radiation 30.0 270 < th dose dependent rect. 15 11
235 45.57 humidity 90.0 270 < th dose independent rect. 1 11
239 45.57 temperature 15.0 30 > th dose dependent rect. 11 1
242 45.57 temperature 10.0 270 > th dose dependent rect. 12 9
243 45.57 radiation 1.0 10 < th dose dependent rect. 15 14
247 45.57 radiation 1.0 10 < th dose dependent rect. 18 20
250 45.58 wind 5.0 4320 > th dose dependent rect. 24 3
253 45.58 radiation 1.0 10 < th dose dependent rect. 15 17
261 45.59 radiation 1.0 10 > th dose independent rect. 14 17
263 45.60 wind 9.0 43200 < th dose independent rect. 15 1
275 45.61 radiation 1.0 10 < th dose independent rect. 6 23
277 45.61 temperature 10.0 270 > th dose dependent rect. 7 5
282 45.62 temperature 20.0 10 > th dose independent rect. 11 3
284 45.62 radiation 20.0 270 < th dose independent rect. 15 11
286 45.62 temperature 10.0 270 > th dose dependent rect. 19 7
287 45.62 humidity 50.0 270 > th dose dependent rect. 1 8
291 45.63 wind 9.0 14400 > th dose independent rect. 16 3
293 45.63 temperature 15.0 270 > th dose independent rect. 17 9
325 45.66 humidity 60.0 4320 > th dose independent rect. 16 1
326 45.66 wind 1.0 14400 < th dose independent rect. 7 2
333 45.67 humidity 50.0 4320 > th dose independent rect. 14 2
339 45.68 humidity 80.0 1440 < th dose independent rect. 9 1
342 45.68 wind 7.0 270 < th dose independent rect. 13 18
344 45.68 humidity 60.0 4320 < th dose dependent rect. 14 3
355 45.69 wind 9.0 14400 > th dose dependent rect. 15 11
365 45.70 radiation 1.0 10 < th dose independent rect. 11 18
367 45.70 precipitation 0.1 270 < th dose independent rect. 12 19
372 45.70 radiation 1.0 10 < th dose dependent rect. 18 18
374 45.70 precipitation 0.1 270 < th dose dependent rect. 12 19
380 45.71 radiation 1.0 270 < th dose independent rect. 11 15
381 45.71 precipitation 0.1 270 < th dose independent rect. 2 15
386 45.71 temperature 30.0 270 < th dose dependent rect. 1 8
391 45.71 precipitation 0.1 270 < th dose dependent rect. 2 15
393 45.72 humidity 80.0 1440 > th dose independent rect. 9 1
400 45.73 precipitation 0.1 270 < th dose independent rect. 7 5
403 45.73 precipitation 0.1 270 < th dose dependent rect. 7 5
412 45.74 radiation 30.0 270 < th dose independent rect. 1 8
441 45.75 temperature 15.0 30 > th dose dependent rect. 12 10
446 45.76 atmosphere 995.0 270 > th dose independent rect. 7 5
447 45.76 atmosphere 1015.0 270 < th dose independent rect. 7 5
449 45.76 temperature 10.0 270 > th dose independent rect. 12 19
450 45.76 radiation 1.0 90 < th dose independent rect. 7 21
456 45.76 wind 1.0 1440 > th dose dependent rect. 3 15
465 45.77 humidity 70.0 10 > th dose independent rect. 18 11
467 45.77 humidity 50.0 90 > th dose independent rect. 9 19
469 45.77 temperature 15.0 270 > th dose dependent rect. 22 3
478 45.78 wind 7.0 1440 < th dose independent rect. 5 3
501 45.78 atmosphere 1015.0 270 < th dose dependent rect. 13 18
502 45.78 radiation 1.0 10 < th dose dependent rect. 20 21
505 45.79 wind 9.0 14400 > th dose independent rect. 15 7
519 45.80 precipitation 0.1 1440 < th dose independent rect. 3 1
527 45.80 precipitation 0.1 270 < th dose independent rect. 12 10
537 45.80 precipitation 0.1 1440 < th dose dependent rect. 3 1
541 45.80 precipitation 0.1 270 < th dose dependent rect. 12 10
549 45.81 humidity 50.0 270 > th dose independent rect. 17 9
558 45.82 humidity 50.0 270 > th dose independent rect. 7 6
594 45.84 radiation 1.0 1440 < th dose independent rect. 11 1
606 45.84 radiation 1.0 1440 < th dose dependent rect. 11 1
618 45.85 radiation 1.0 10 < th dose independent rect. 18 11
622 45.85 radiation 1.0 10 < th dose dependent rect. 18 11
625 45.85 wind 1.0 14400 < th dose dependent rect. 1 16
629 45.86 wind 1.0 4320 > th dose independent rect. 9 2
632 45.86 radiation 1.0 10 < th dose independent rect. 13 16
650 45.87 temperature 15.0 10 > th dose independent rect. 18 11
655 45.87 humidity 90.0 270 < th dose dependent rect. 12 9
659 45.87 radiation 1.0 10 < th dose dependent rect. 18 14
665 45.87 wind 1.0 14400 < th dose dependent rect. 1 18
692 45.89 humidity 60.0 4320 < th dose independent rect. 16 1
693 45.89 humidity 60.0 14400 > th dose independent rect. 9 2
699 45.89 temperature 10.0 270 > th dose independent rect. 2 15
700 45.89 atmosphere 1015.0 270 < th dose independent rect. 2 15
714 45.89 wind 9.0 14400 > th dose dependent rect. 15 22
718 45.90 wind 5.0 90 < th dose independent rect. 19 9
734 45.90 radiation 40.0 10 < th dose dependent rect. 11 18
735 45.90 radiation 1.0 10 < th dose dependent rect. 22 19
738 45.91 radiation 1.0 270 > th dose independent rect. 9 2
744 45.91 wind 9.0 14400 < th dose independent rect. 15 7
745 45.91 wind 5.0 10 < th dose independent rect. 22 7
746 45.91 wind 9.0 270 < th dose independent rect. 17 9
767 45.92 temperature 30.0 270 < th dose independent rect. 17 9
770 45.92 wind 1.0 14400 < th dose independent rect. 2 15
773 45.92 temperature 15.0 270 > th dose independent rect. 6 21
776 45.92 humidity 90.0 10 < th dose dependent rect. 14 8
778 45.92 wind 1.0 14400 < th dose dependent rect. 2 12
788 45.93 temperature 25.0 270 < th dose independent sin 9 NA
812 45.94 temperature 20.0 10 > th dose independent rect. 14 8
815 45.94 humidity 50.0 270 > th dose independent rect. 7 18
840 45.95 radiation 30.0 10 < th dose independent rect. 11 18
845 45.95 atmosphere 1015.0 10 < th dose dependent rect. 14 8
856 45.96 precipitation 0.1 270 < th dose independent rect. 17 9
863 45.96 precipitation 0.1 270 < th dose dependent rect. 17 9
874 45.97 wind 5.0 1440 < th dose independent rect. 3 7
880 45.97 radiation 1.0 10 < th dose independent rect. 15 14
904 45.98 wind 7.0 10 < th dose independent rect. 11 1
915 45.98 precipitation 0.1 10 < th dose independent rect. 5 13
927 45.98 precipitation 0.1 10 < th dose dependent rect. 5 13
940 45.99 wind 1.0 270 > th dose independent rect. 17 9
941 45.99 temperature 30.0 10 < th dose independent rect. 18 11
942 45.99 wind 1.0 14400 < th dose independent rect. 2 12
945 45.99 precipitation 0.1 270 < th dose independent rect. 22 14
946 45.99 radiation 1.0 10 > th dose independent rect. 16 15
964 45.99 precipitation 0.1 270 < th dose dependent rect. 22 14
967 45.99 atmosphere 1015.0 30 < th dose dependent rect. 14 19
980 46.00 atmosphere 995.0 270 > th dose independent rect. 7 18
981 46.00 wind 1.0 14400 < th dose dependent sin 2 NA
988 46.00 wind 1.0 14400 < th dose dependent rect. 4 13
999 46.01 wind 5.0 1440 > th dose independent rect. 3 7