BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0578100 Os05g0578100|AK108425
         (306 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0578100  Protein of unknown function DUF1645 family pro...   392   e-109
Os01g0639600  Protein of unknown function DUF1645 family pro...   134   6e-32

>Os05g0578100 Protein of unknown function DUF1645 family protein
          Length = 306

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/306 (68%), Positives = 210/306 (68%)

Query: 1   MEERIPEPQDPTADVAADVLPAEASSSDVTTTGVXXXXXXXXXXXXXXPFVSRDSPAGTA 60
           MEERIPEPQDPTADVAADVLPAEASSSDVTTTGV              PFVSRDSPAGTA
Sbjct: 1   MEERIPEPQDPTADVAADVLPAEASSSDVTTTGVEEESDSDGEFEFEFPFVSRDSPAGTA 60

Query: 61  AVADDLFADGRIKPFYPVFXXXXXXXXXDRQQHLAKDDAAATVPPRTRGPLGRLFLEESR 120
           AVADDLFADGRIKPFYPVF         DRQQHLAKDDAAATVPPRTRGPLGRLFLEESR
Sbjct: 61  AVADDLFADGRIKPFYPVFGRAGAGGGGDRQQHLAKDDAAATVPPRTRGPLGRLFLEESR 120

Query: 121 GSFDRWXXXXXXXXXXXAPASDEGGLDGAPPESYCLWTXXXXXXXXXXXXXXXXXXXXXX 180
           GSFDRW           APASDEGGLDGAPPESYCLWT                      
Sbjct: 121 GSFDRWSTSTSSSSSSSAPASDEGGLDGAPPESYCLWTPGAGAGSASASASPRPPRKSGS 180

Query: 181 TGSMARWRRISELVVGRSHSDGKEKFLFLPIPPPSSKENDVEHFXXXXXXXXXXXASGRK 240
           TGSMARWRRISELVVGRSHSDGKEKFLFLPIPPPSSKENDVEHF           ASGRK
Sbjct: 181 TGSMARWRRISELVVGRSHSDGKEKFLFLPIPPPSSKENDVEHFKPKPKPPKPTPASGRK 240

Query: 241 TXXXXXXXXXXXXXIHRIAYXXXXXXXXXXXXXXXXPRRTFLPYREELVGLFANVNGISR 300
           T             IHRIAY                PRRTFLPYREELVGLFANVNGISR
Sbjct: 241 TAQAAAAEIDTVAAIHRIAYGAKGGGATGTSAGGGTPRRTFLPYREELVGLFANVNGISR 300

Query: 301 SHPHPF 306
           SHPHPF
Sbjct: 301 SHPHPF 306



>Os01g0639600 Protein of unknown function DUF1645 family protein
          Length = 248

 Score =  134 bits (338), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 97/262 (37%), Positives = 119/262 (45%), Gaps = 45/262 (17%)

Query: 49  PFVSRDSPAGTAAVADDLFADGRIKPFYPVFXXXXXXXXXDRQQHLAKDDAAATVPPRTR 108
           PFVSR++ AG   VAD+LFADGRI+ FYPVF                 DD A T      
Sbjct: 28  PFVSRETDAG--GVADELFADGRIRAFYPVFGRVL-------------DDVAVTPAAAAA 72

Query: 109 GP----LGRLFLEESRGSFDRWXXXXXXXXXXXAPASDEGGLDGAPPESYCLWTXXXXXX 164
                 LGRLFLEE R                 + ++D   LDG  P+SYC+W       
Sbjct: 73  EERRPPLGRLFLEEGR-------TSSVGSTSSSSSSTDIAELDGVSPDSYCVWVPGSSPA 125

Query: 165 XXXXXXXXXXXXXXXXTGSMARWRRISELVVGRSHSDGKEKFLFLPIPPPSSKENDVEHF 224
                           TGS+ARWRRISELVVGRSHSDGKEKF FL  P   ++++     
Sbjct: 126 SSPSRPPRKSGS----TGSIARWRRISELVVGRSHSDGKEKFRFLSAPSSPARDH----- 176

Query: 225 XXXXXXXXXXXASGRKTXXXXXXXXXXXXXIHRIAYXXXXXXXXXXXXXXXXPRRTFLPY 284
                        G                 HR++Y                 RRTFLPY
Sbjct: 177 ----PKPKPTTKGGAAAATKLHTELDTIAAGHRLSYSPNHKAHGGAT------RRTFLPY 226

Query: 285 REELVGLFANVNGISRSHPHPF 306
           R++L+G+FANVNG+SR+H  PF
Sbjct: 227 RQDLMGIFANVNGLSRTHHRPF 248



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,660,180
Number of extensions: 268323
Number of successful extensions: 546
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 205
Effective length of database: 11,762,187
Effective search space: 2411248335
Effective search space used: 2411248335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)