BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0566200 Os05g0566200|AK099836
(318 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0566200 Similar to Small CTD phosphatase 1 splice variant 660 0.0
Os01g0665300 NLI interacting factor domain containing protein 144 7e-35
Os03g0850100 NLI interacting factor domain containing protein 74 2e-13
>Os05g0566200 Similar to Small CTD phosphatase 1 splice variant
Length = 318
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MLTLMMKNNCNDDDIGSEFYDSFNLDNTIENVHSQNNKLELAKTGEFNQYEQTTGFSLPC 60
MLTLMMKNNCNDDDIGSEFYDSFNLDNTIENVHSQNNKLELAKTGEFNQYEQTTGFSLPC
Sbjct: 1 MLTLMMKNNCNDDDIGSEFYDSFNLDNTIENVHSQNNKLELAKTGEFNQYEQTTGFSLPC 60
Query: 61 GDLQYDVYLRTQIAGQDNKSGEGADFMDDGTFTLLKDLVTESRTSSPYYEKDHQLNSLNY 120
GDLQYDVYLRTQIAGQDNKSGEGADFMDDGTFTLLKDLVTESRTSSPYYEKDHQLNSLNY
Sbjct: 61 GDLQYDVYLRTQIAGQDNKSGEGADFMDDGTFTLLKDLVTESRTSSPYYEKDHQLNSLNY 120
Query: 121 VNQDGHGIPTTTNPTWDLTQSCNPLNHSLTEDSVPFNVGTSAGVLTNATSNDFIPIDELA 180
VNQDGHGIPTTTNPTWDLTQSCNPLNHSLTEDSVPFNVGTSAGVLTNATSNDFIPIDELA
Sbjct: 121 VNQDGHGIPTTTNPTWDLTQSCNPLNHSLTEDSVPFNVGTSAGVLTNATSNDFIPIDELA 180
Query: 181 ITSGRYGVLPSIEKTEEGSIAIDEANSFGATATMCYNSVHFSHWIDQNLTGPLPDLADLP 240
ITSGRYGVLPSIEKTEEGSIAIDEANSFGATATMCYNSVHFSHWIDQNLTGPLPDLADLP
Sbjct: 181 ITSGRYGVLPSIEKTEEGSIAIDEANSFGATATMCYNSVHFSHWIDQNLTGPLPDLADLP 240
Query: 241 DIYPDSFLPTPRKNITLVLDLDETLIHSSAVDRDGADFSFPMYHGLKEHTVYVKKRPHVD 300
DIYPDSFLPTPRKNITLVLDLDETLIHSSAVDRDGADFSFPMYHGLKEHTVYVKKRPHVD
Sbjct: 241 DIYPDSFLPTPRKNITLVLDLDETLIHSSAVDRDGADFSFPMYHGLKEHTVYVKKRPHVD 300
Query: 301 TFLQKVSEMFKMVAILRI 318
TFLQKVSEMFKMVAILRI
Sbjct: 301 TFLQKVSEMFKMVAILRI 318
>Os01g0665300 NLI interacting factor domain containing protein
Length = 439
Score = 144 bits (364), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 168/336 (50%), Gaps = 41/336 (12%)
Query: 1 MLTLMMKNNCNDDDIGSEFYDSFNLDNTIENVHSQNNKLELAKTGEFNQYEQTTGFSLPC 60
M L MK N +DD EF S+ K + ++ EQ+ +LP
Sbjct: 1 MPALRMKRNFDDDVFRDEF-------------DSKPTKSMKISHFQVSELEQSAVLNLPY 47
Query: 61 GDLQYDVYLRTQIAGQDNKSGEGADFMDD--GTFTLLKDLVTESRTSSPYYEKD------ 112
D ++ L TQ+AGQD E A +DD G +LLKDL++E S P E D
Sbjct: 48 KDPHDELDLTTQLAGQDIMIMEAAS-LDDALGGASLLKDLISEVAVS-PNMENDMLVNYE 105
Query: 113 ---HQLNSLNYVNQDGHGIPTTTNP--------TWDLTQSCNPLNHSLTEDSVPFNVGTS 161
QLN +NY ++D + N +W + C+ L+ +D+ F + T
Sbjct: 106 DIRSQLNVVNYFDKDEDANSASYNSCTVNCHEESWGSNEGCSLLDIYNPDDAFSFLLDTP 165
Query: 162 AGVLTNATS--NDFIPIDELAITSGRYGVLPSIEKTEEGSIAIDEANSFGATATMCYNSV 219
+ L + T+ ++ +PID L SGR GV P E T E SI + S G M +++
Sbjct: 166 SEFLGSFTALYDEVVPIDSLVNISGRCGVFPLTESTTEASIGNEPCRSEG---DMLFSNS 222
Query: 220 HFSHWIDQNLTGP-LPDLADLPDIYPDSFLPTP-RKNITLVLDLDETLIHSSAVDRDGAD 277
W++ +L LP+L D ++ + + +TLVLDLDETL+HS+ D D
Sbjct: 223 EVLEWLNPHLAEEDLPNLVDFTELNSHAVSKEQGARKVTLVLDLDETLVHSTTEQCDDYD 282
Query: 278 FSFPMYHGLKEHTVYVKKRPHVDTFLQKVSEMFKMV 313
F+FP++ +KEH VYV+KRPH+ FLQK++EMF++V
Sbjct: 283 FTFPVFFDMKEHMVYVRKRPHLHMFLQKMAEMFEVV 318
>Os03g0850100 NLI interacting factor domain containing protein
Length = 444
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 57/86 (66%), Gaps = 7/86 (8%)
Query: 233 LPDLADL-----PDIYPDSFLPTPRKNITLVLDLDETLIHSSAVDRDGADFSFPMYHGLK 287
LPDL+ + P + P PR TLVLDLDETL+HS+ + +DF+FP++ L+
Sbjct: 235 LPDLSLVVPKFQPVLLPKQTRSCPR--TTLVLDLDETLVHSTLEPCEDSDFTFPVHFNLR 292
Query: 288 EHTVYVKKRPHVDTFLQKVSEMFKMV 313
EHT+YV+ RP++ FL+ V+ MF+++
Sbjct: 293 EHTIYVRCRPYLKEFLETVASMFEII 318
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,200,409
Number of extensions: 490748
Number of successful extensions: 982
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 980
Number of HSP's successfully gapped: 3
Length of query: 318
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 217
Effective length of database: 11,762,187
Effective search space: 2552394579
Effective search space used: 2552394579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 156 (64.7 bits)