BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0562800 Os05g0562800|AK064046
(79 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0562800 Protein of unknown function DUF679 family protein 160 2e-40
Os06g0352200 Protein of unknown function DUF679 family protein 85 1e-17
Os08g0106501 Protein of unknown function DUF679 family protein 72 6e-14
Os02g0479000 67 2e-12
Os07g0645300 Protein of unknown function DUF679 family protein 62 6e-11
>Os05g0562800 Protein of unknown function DUF679 family protein
Length = 79
Score = 160 bits (405), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 SSNIGRDEEENASKCQGIIIIIAVALFDQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSM 60
SSNIGRDEEENASKCQGIIIIIAVALFDQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSM
Sbjct: 1 SSNIGRDEEENASKCQGIIIIIAVALFDQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSM 60
Query: 61 LFVSFPTTRHGIGFPLSPR 79
LFVSFPTTRHGIGFPLSPR
Sbjct: 61 LFVSFPTTRHGIGFPLSPR 79
>Os06g0352200 Protein of unknown function DUF679 family protein
Length = 253
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 50/59 (84%)
Query: 18 IIIIIAVALFDQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSMLFVSFPTTRHGIGFPL 76
+I+ ++VA+FD NV +CFYPV S TRQVLT +P+A G+VG+MLF +FP+TRHGIGFP+
Sbjct: 192 LIVFLSVAMFDHNVGACFYPVMSYDTRQVLTDVPLAGGLVGTMLFATFPSTRHGIGFPV 250
>Os08g0106501 Protein of unknown function DUF679 family protein
Length = 224
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 24 VALFDQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSMLFVSFPTTRHGIGFPLS 77
VA D+NVV CF+P P++GT +VL +P+ +GV+ S+LFV FPTTRHGIG+P++
Sbjct: 164 VAARDKNVVGCFWPSPAKGTEEVLGIVPLGVGVMCSLLFVVFPTTRHGIGYPVT 217
>Os02g0479000
Length = 216
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 20 IIIAVALFDQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSMLFVSFPTTRHGIGFPLS 77
+ +AVA+ D+NVV+CFYPV S TRQ+L A+P+A G GS LF FP+TR GIGFP++
Sbjct: 156 VFLAVAMVDRNVVACFYPVESPATRQLLAAVPMAAGAAGSFLFAMFPSTRRGIGFPVA 213
>Os07g0645300 Protein of unknown function DUF679 family protein
Length = 188
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 28 DQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSMLFVSFPTTRHGIGFP 75
D N VSCFYP + ++V+ ALP+ +G + S++FV FP+TRHGIG+P
Sbjct: 129 DANTVSCFYPSLKDQQKKVVMALPVVVGALASVVFVVFPSTRHGIGYP 176
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.140 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,679,685
Number of extensions: 88625
Number of successful extensions: 157
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 5
Length of query: 79
Length of database: 17,035,801
Length adjustment: 50
Effective length of query: 29
Effective length of database: 14,425,101
Effective search space: 418327929
Effective search space used: 418327929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)