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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0562800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF679 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.43 (0.065) R2 : 0.643
β1 : -5.45 (0.239) R2dD : 0.44 R2D : 0.313
β2 : 2.36 (0.165) R2dC : 0.161 R2C : 0.11
β3 : -1.14 (0.265) R2dE : 0.0168 R2E : -0.00798
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.64 (1.17) R2dD*E : 0.0206 R2D*E : -0.0207
γ1 : -1.65 (0.142) R2dN8 : 0.154 R2N8 : 0.00383
σ : 1.2
deviance : 658.67
__
_____
C
peak time of C : 7.28
E
wheather : atmosphere
threshold : 1004
memory length : 5021
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
660.98 1.21 6.43 -5.38 2.37 -1.07 -0.766 -5.05 -1.66 7.28 1004 4441 -- --
689.78 1.22 6.39 -5.25 2.43 -1.32 -0.533 -- -1.68 7.28 1004 4427 -- --
658.67 1.2 6.43 -5.45 2.36 -1.14 -- -5.64 -1.65 7.28 1004 5021 -- --
691.09 1.22 6.39 -5.23 2.39 -1.37 -- -- -1.7 7.27 1004 4403 -- --
954.41 1.44 6.49 -5.38 -- -1.09 -- -5.9 -1.61 -- 1004 5021 -- --
736.68 1.27 6.34 -5.35 2.38 -- -0.762 -- -1.48 7.29 -- -- -- --
738.24 1.27 6.34 -5.37 2.38 -- -- -- -1.48 7.28 -- -- -- --
979.7 1.46 6.42 -4.93 -- -1.63 -- -- -1.58 -- 999.7 10960 -- --
1407.8 1.75 6.25 -- 2.45 -1.54 -- -- -1.15 7.32 1003 4426 -- --
1037.53 1.51 6.4 -5.33 -- -- -- -- -1.44 -- -- -- -- --
1497.47 1.81 6.21 -- 2.32 -- -- -- -0.885 7.43 -- -- -- --
1606.39 1.87 6.35 -- -- -2.5 -- -- -1.17 -- 999.2 14610 -- --
1785.69 1.97 6.26 -- -- -- -- -- -0.852 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 656.69 atmosphere 1005 4320 > th dose independent rect. 9 1
2 656.72 wind 5 43200 > th dose independent rect. 14 1
3 657.24 wind 5 43200 < th dose independent rect. 14 1
4 657.37 atmosphere 1005 4320 < th dose independent rect. 9 1
7 658.48 wind 7 43200 < th dose dependent rect. 14 1
12 659.63 wind 1 43200 > th dose dependent rect. 14 1
21 660.68 temperature 30 43200 > th dose dependent rect. 8 1
43 661.48 atmosphere 995 14400 > th dose independent rect. 8 5
57 662.76 atmosphere 1005 14400 < th dose independent rect. 4 4
58 662.78 atmosphere 1005 14400 < th dose independent rect. 4 6
79 663.34 temperature 20 270 > th dose independent rect. 14 19
87 663.62 temperature 30 43200 > th dose independent rect. 8 1
111 663.80 atmosphere 1005 14400 < th dose independent rect. 4 1
119 664.11 atmosphere 1005 14400 > th dose independent rect. 4 5
135 664.24 atmosphere 1000 30 > th dose independent rect. 4 8
157 664.62 wind 5 43200 > th dose independent rect. 14 5
171 664.84 wind 5 43200 < th dose independent rect. 13 6
247 666.09 temperature 30 43200 < th dose independent rect. 5 4
257 666.22 temperature 30 43200 < th dose independent rect. 7 2
270 666.34 temperature 30 43200 < th dose independent rect. 19 14
274 666.41 temperature 30 43200 < th dose independent rect. 1 8
300 666.76 atmosphere 995 14400 < th dose independent rect. 4 11
306 666.83 wind 1 43200 > th dose dependent rect. 13 9
307 666.84 atmosphere 995 14400 < th dose dependent rect. 4 12
309 666.86 temperature 30 43200 < th dose independent rect. 22 11
311 666.87 atmosphere 1010 14400 < th dose dependent rect. 21 1
315 666.91 atmosphere 995 14400 < th dose independent rect. 1 15
329 666.99 atmosphere 995 14400 > th dose independent rect. 3 12
350 667.13 wind 9 43200 < th dose dependent rect. 13 9
352 667.14 atmosphere 1005 14400 > th dose independent sin 8 NA
356 667.16 atmosphere 995 14400 > th dose independent rect. 1 15
362 667.18 atmosphere 995 14400 > th dose independent rect. 19 21
369 667.24 atmosphere 995 14400 > th dose independent rect. 22 18
376 667.29 atmosphere 1005 14400 < th dose independent sin 6 NA
412 667.60 wind 9 14400 < th dose independent rect. 20 1
413 667.60 wind 5 43200 < th dose independent rect. 14 10
421 667.66 atmosphere 995 14400 > th dose independent rect. 13 2
424 667.66 atmosphere 995 14400 < th dose dependent rect. 14 8
437 667.70 wind 5 43200 < th dose independent rect. 14 13
447 667.77 atmosphere 995 14400 > th dose independent sin 4 NA
460 667.87 atmosphere 995 14400 > th dose independent rect. 15 1
463 667.89 atmosphere 995 14400 < th dose dependent sin 1 NA
469 667.92 atmosphere 1010 14400 < th dose dependent rect. 15 1
497 668.03 atmosphere 995 14400 > th dose independent rect. 11 5
505 668.04 atmosphere 1010 14400 < th dose dependent rect. 14 8
519 668.08 atmosphere 995 14400 < th dose independent sin 4 NA
533 668.13 atmosphere 995 14400 < th dose independent rect. 14 8
546 668.15 atmosphere 995 14400 < th dose independent rect. 15 1
593 668.21 atmosphere 995 14400 > th dose independent rect. 11 11
595 668.21 atmosphere 995 14400 > th dose dependent rect. 21 1
596 668.21 atmosphere 995 14400 < th dose dependent rect. 15 1
635 668.27 wind 3 43200 > th dose dependent rect. 13 14
636 668.28 atmosphere 995 14400 > th dose independent sin 22 NA
663 668.32 atmosphere 1010 14400 < th dose dependent rect. 13 16
669 668.34 atmosphere 995 14400 < th dose independent sin 22 NA
684 668.38 atmosphere 1010 14400 < th dose dependent sin 16 NA
778 668.49 atmosphere 1010 14400 < th dose dependent rect. 9 15
801 668.51 atmosphere 1010 14400 < th dose dependent rect. 9 13
866 668.57 wind 5 43200 > th dose independent rect. 14 10