BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0562800 Os05g0562800|AK064046
(79 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46090.1 | chr5:18693485-18694129 FORWARD LENGTH=215 85 8e-18
AT4G18425.1 | chr4:10181421-10182062 REVERSE LENGTH=214 81 1e-16
AT4G28485.1 | chr4:14075321-14076011 REVERSE LENGTH=166 78 1e-15
AT4G24310.1 | chr4:12600900-12601541 FORWARD LENGTH=214 74 2e-14
AT3G02430.1 | chr3:499360-500019 FORWARD LENGTH=220 63 3e-11
AT5G39650.1 | chr5:15875265-15875999 FORWARD LENGTH=245 55 1e-08
AT1G09157.1 | chr1:2951665-2952396 REVERSE LENGTH=244 53 4e-08
AT3G21550.1 | chr3:7591708-7592262 REVERSE LENGTH=185 52 8e-08
AT3G21520.1 | chr3:7582000-7582623 FORWARD LENGTH=208 51 1e-07
>AT5G46090.1 | chr5:18693485-18694129 FORWARD LENGTH=215
Length = 214
Score = 84.7 bits (208), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 45/57 (78%)
Query: 23 AVALFDQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSMLFVSFPTTRHGIGFPLSPR 79
AV LFDQNVV+CFYP PS ++LT LP+A+GV SM+F FPTTRHGIGFPLS +
Sbjct: 158 AVVLFDQNVVNCFYPEPSAEVVELLTTLPVAVGVFCSMVFAKFPTTRHGIGFPLSAK 214
>AT4G18425.1 | chr4:10181421-10182062 REVERSE LENGTH=214
Length = 213
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 47/62 (75%)
Query: 18 IIIIIAVALFDQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSMLFVSFPTTRHGIGFPLS 77
+ + AV LFD+N V+CF+P PS +VLTALP+ +GV SMLF +FPTTR+GIGFPLS
Sbjct: 152 LFVFGAVVLFDRNAVNCFFPSPSAEALEVLTALPVGVGVFSSMLFATFPTTRNGIGFPLS 211
Query: 78 PR 79
+
Sbjct: 212 SK 213
>AT4G28485.1 | chr4:14075321-14076011 REVERSE LENGTH=166
Length = 165
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 46/60 (76%)
Query: 18 IIIIIAVALFDQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSMLFVSFPTTRHGIGFPLS 77
+++ AV++FDQNV C +PVPSE T+++LT+LP IGV+ F++FPT RHGIG PL+
Sbjct: 104 MLVFFAVSMFDQNVTRCLFPVPSEETKEILTSLPFVIGVICGAFFLAFPTRRHGIGSPLT 163
>AT4G24310.1 | chr4:12600900-12601541 FORWARD LENGTH=214
Length = 213
Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 18 IIIIIAVALFDQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSMLFVSFPTTRHGIGFPLS 77
+++ AVAL D+N VSCFYP P + T++VL +P+ +GV+ MLF+ FP RHGIG+P++
Sbjct: 148 VLVFGAVALRDKNAVSCFYPAPEQETKKVLDIVPMGVGVICGMLFLVFPARRHGIGYPVT 207
>AT3G02430.1 | chr3:499360-500019 FORWARD LENGTH=220
Length = 219
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 18 IIIIIAVALFDQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSMLFVSFPTTRHGIGF 74
+++ AVAL D+ + CFYP P T+ VL +P+ +GV+ S+LF+ FP RHGIG+
Sbjct: 154 VLVFGAVALRDKYITDCFYPSPEAETKHVLDIVPVGVGVMCSLLFMVFPARRHGIGY 210
>AT5G39650.1 | chr5:15875265-15875999 FORWARD LENGTH=245
Length = 244
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 18 IIIIIAVALFDQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSMLFVSFPTTRHGIG 73
+++ +A+A D+ V C +P + QV+ + PI +G+V S LF+ FPTTR+G+G
Sbjct: 185 VLVFMAIAFSDRRVTGCLFPGKEKEMDQVMESFPIMVGIVCSALFLVFPTTRYGVG 240
>AT1G09157.1 | chr1:2951665-2952396 REVERSE LENGTH=244
Length = 243
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 18 IIIIIAVALFDQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSMLFVSFPTTRHGIG 73
+++ +A+A D+ V C +P + QV+ + P+ +G+V S LF+ FPT+R+G+G
Sbjct: 184 VLVFMAIAFSDRRVTGCLFPGKEKEMDQVMESFPLMVGIVCSALFLVFPTSRYGVG 239
>AT3G21550.1 | chr3:7591708-7592262 REVERSE LENGTH=185
Length = 184
Score = 51.6 bits (122), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 18 IIIIIAVALFDQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSMLFVSFPTTRHGIGFP 75
+I+ ++L D N V+CFYP + L LP IGV+ +F FP+ RHGIG P
Sbjct: 115 LIVFSVISLLDANTVNCFYPGFGSAGKIFLMVLPPVIGVISGAVFTVFPSRRHGIGNP 172
>AT3G21520.1 | chr3:7582000-7582623 FORWARD LENGTH=208
Length = 207
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 24 VALFDQNVVSCFYPVPSEGTRQVLTALPIAIGVVGSMLFVSFPTTRHGIGF 74
+ L D N SCFYP E + ++ ALP A+GV + +F FP+ R GIG+
Sbjct: 137 LVLLDANTASCFYPRFRETQKTLVMALPPAVGVASATIFALFPSKRSGIGY 187
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.140 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,728,468
Number of extensions: 56642
Number of successful extensions: 122
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 9
Length of query: 79
Length of database: 11,106,569
Length adjustment: 51
Effective length of query: 28
Effective length of database: 9,708,353
Effective search space: 271833884
Effective search space used: 271833884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)