BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0543800 Os05g0543800|AK072185
         (331 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0543800  Conserved hypothetical protein                      484   e-137
Os04g0576700  Conserved hypothetical protein                      140   2e-33
Os10g0550200  Conserved hypothetical protein                      100   1e-21

>Os05g0543800 Conserved hypothetical protein
          Length = 331

 Score =  484 bits (1247), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/304 (79%), Positives = 241/304 (79%)

Query: 28  DAGTNKEHGVPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDWVWDWRNPNRSVPPP 87
           DAGTNKEHGVPM                               LDWVWDWRNPNRSVPPP
Sbjct: 28  DAGTNKEHGVPMGGRRGSGGAGADQEGGIPMGGRSGGSGAGFGLDWVWDWRNPNRSVPPP 87

Query: 88  PTEDIPAVPGSSGVLPLSNLQSKRQYXXXXXXXXXXXXXXXXQRHSEKLSDTHGXXXXXX 147
           PTEDIPAVPGSSGVLPLSNLQSKRQY                QRHSEKLSDTHG      
Sbjct: 88  PTEDIPAVPGSSGVLPLSNLQSKRQYLVSSLMLLSSLPLSDLQRHSEKLSDTHGSDKEDE 147

Query: 148 XXXXXXXXXXPYFNYLVDSFMTATKAQPKQLYGNIDLVAAAQRQSNEYASSALDYYNKDE 207
                     PYFNYLVDSFMTATKAQPKQLYGNIDLVAAAQRQSNEYASSALDYYNKDE
Sbjct: 148 VVDSSDDDCDPYFNYLVDSFMTATKAQPKQLYGNIDLVAAAQRQSNEYASSALDYYNKDE 207

Query: 208 NNKIQYSLIKALKSSTIREKGEKYGHVNFIASLDSKEELFFAEVCWDPKNYDMVPTCIVS 267
           NNKIQYSLIKALKSSTIREKGEKYGHVNFIASLDSKEELFFAEVCWDPKNYDMVPTCIVS
Sbjct: 208 NNKIQYSLIKALKSSTIREKGEKYGHVNFIASLDSKEELFFAEVCWDPKNYDMVPTCIVS 267

Query: 268 LEEKRRIGGRSFINDEYVVCLDLQNPPIDGKHCYGCSEEIKHPEDGSTFKAGHVAATGFY 327
           LEEKRRIGGRSFINDEYVVCLDLQNPPIDGKHCYGCSEEIKHPEDGSTFKAGHVAATGFY
Sbjct: 268 LEEKRRIGGRSFINDEYVVCLDLQNPPIDGKHCYGCSEEIKHPEDGSTFKAGHVAATGFY 327

Query: 328 DSFM 331
           DSFM
Sbjct: 328 DSFM 331



>Os04g0576700 Conserved hypothetical protein
          Length = 418

 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/175 (45%), Positives = 106/175 (60%), Gaps = 8/175 (4%)

Query: 158 PYFNYLVDSFMTA-TKAQPKQLYGNIDLVAAAQRQSNEYASSALDYYNKDENNKIQYSLI 216
           PYFN LVD F+ A T          ID +AA Q QS  YA SAL +YN ++ NKI+Y LI
Sbjct: 248 PYFNSLVDDFIGAVTSTDLLASSPEIDYMAANQSQSLFYAESALKHYNNNDENKIKYELI 307

Query: 217 KALKSSTIREKGEKYGHVNFIAS---LDSKEELFFAEVCWDPKNYDMVPTCIVSLEEKRR 273
            A+ S+ I ++   YGHVNF+A     DS +E FFAEV WD  +Y  VP C+VSLE K +
Sbjct: 308 SAITSNAIIDR-SGYGHVNFVAKGDLPDSVDEFFFAEVRWDIDSY--VPVCMVSLEGKEK 364

Query: 274 IGGRSFINDEYVVCLDLQNPPIDGKHCYGCSEEIKHPEDGSTFKAGHVAATGFYD 328
            GG   I  +Y         P+D  HCY C + +KHPEDG+ +++GH+A+  +YD
Sbjct: 365 SGGYRDIEVDYPRG-GFVGVPVDKNHCYACGDGLKHPEDGTLYESGHIASGSYYD 418



>Os10g0550200 Conserved hypothetical protein
          Length = 141

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 79/121 (65%), Gaps = 7/121 (5%)

Query: 210 KIQYSLIKALKSSTIREKGEKYGHVNFIASLDSK--EELFFAEVCWDPKNYDMVPTCIVS 267
           +I+Y L++ + S    ++G  +GHVNFIA  D K  EELFFAEV W+   Y  +PTC+VS
Sbjct: 26  EIKYELVRTITSCGNLDEG-FHGHVNFIAKGDCKNSEELFFAEVRWENNGY--IPTCMVS 82

Query: 268 LEEKRRIGGRSFINDEYVVCLDLQNPPIDGKHCYGCSEEIKHPEDGSTFKAGHVAATGFY 327
           LE K +IGG       Y     +   PID +HCY C +E+KHPEDG+ +++GHVA++ +Y
Sbjct: 83  LEGKEKIGGYYGARVHYP--RGVPGLPIDKQHCYFCGDELKHPEDGTLYESGHVASSDYY 140

Query: 328 D 328
           +
Sbjct: 141 E 141



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,387,461
Number of extensions: 349183
Number of successful extensions: 1192
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1184
Number of HSP's successfully gapped: 3
Length of query: 331
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 230
Effective length of database: 11,762,187
Effective search space: 2705303010
Effective search space used: 2705303010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)