Os05g0543800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0543800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.56 | 0.202 | 9.59 | -0.372 | 0.284 | 0.352 | 0.263 | -0.531 | -0.126 | 5.71 | 25.34 | 1332 | -- | -- |
| 18.66 | 0.201 | 9.57 | -0.235 | 0.274 | 0.295 | 0.244 | -- | -0.0911 | 5.6 | 25.4 | 1340 | -- | -- |
| 18.69 | 0.201 | 9.59 | -0.378 | 0.286 | 0.354 | -- | -0.572 | -0.127 | 5.36 | 25.54 | 1344 | -- | -- |
| 18.76 | 0.202 | 9.57 | -0.231 | 0.288 | 0.291 | -- | -- | -0.0886 | 5.36 | 25.61 | 1342 | -- | -- |
| 22.87 | 0.223 | 9.6 | -0.359 | -- | 0.397 | -- | -0.467 | -0.134 | -- | 24.6 | 1299 | -- | -- |
| 22.2 | 0.221 | 9.57 | -0.13 | 0.313 | -- | 0.219 | -- | -0.0609 | 5.2 | -- | -- | -- | -- |
| 22.3 | 0.221 | 9.57 | -0.13 | 0.314 | -- | -- | -- | -0.0621 | 4.99 | -- | -- | -- | -- |
| 22.95 | 0.223 | 9.58 | -0.236 | -- | 0.341 | -- | -- | -0.092 | -- | 25.02 | 1305 | -- | -- |
| 20.03 | 0.208 | 9.56 | -- | 0.278 | 0.241 | -- | -- | -0.0484 | 5.34 | 26.36 | 1314 | -- | -- |
| 27.49 | 0.245 | 9.57 | -0.119 | -- | -- | -- | -- | -0.054 | -- | -- | -- | -- | -- |
| 22.75 | 0.223 | 9.56 | -- | 0.312 | -- | -- | -- | -0.0476 | 5 | -- | -- | -- | -- |
| 24.25 | 0.229 | 9.57 | -- | -- | 0.288 | -- | -- | -0.0596 | -- | 25.4 | 1297 | -- | -- |
| 27.86 | 0.246 | 9.57 | -- | -- | -- | -- | -- | -0.0409 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.35 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 3 |
| 2 | 17.49 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 1 |
| 4 | 17.51 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 11 |
| 7 | 17.62 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 10 |
| 8 | 17.63 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 12 | 17.74 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 16 | 17.78 | radiation | 30 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 24 | 17.90 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 2 |
| 31 | 17.95 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 4 |
| 56 | 18.10 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 59 | 18.11 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 66 | 18.14 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 18 |
| 82 | 18.22 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 10 |
| 123 | 18.35 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 128 | 18.36 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 133 | 18.37 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 10 |
| 175 | 18.43 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 191 | 18.44 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 226 | 18.48 | humidity | 90 | 720 | < th | dose dependent | sin | 14 | NA |
| 252 | 18.50 | humidity | 90 | 720 | < th | dose independent | rect. | 10 | 14 |
| 265 | 18.51 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 3 |
| 307 | 18.54 | humidity | 90 | 720 | < th | dose independent | rect. | 12 | 12 |
| 331 | 18.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 332 | 18.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 333 | 18.56 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 17 | 1 |
| 334 | 18.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 335 | 18.56 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 5 |
| 351 | 18.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 11 |
| 356 | 18.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 21 |
| 367 | 18.57 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 443 | 18.59 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 11 |
| 446 | 18.59 | humidity | 60 | 720 | > th | dose dependent | sin | 16 | NA |
| 536 | 18.61 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 19 |
| 580 | 18.62 | temperature | 30 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 581 | 18.62 | temperature | 30 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 588 | 18.62 | radiation | 30 | 1440 | < th | dose independent | rect. | 1 | 7 |
| 639 | 18.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 648 | 18.63 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 661 | 18.63 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 678 | 18.63 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 15 |
| 702 | 18.64 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 1 |
| 705 | 18.64 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 712 | 18.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 755 | 18.65 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 817 | 18.67 | temperature | 30 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 827 | 18.67 | humidity | 90 | 720 | < th | dose independent | rect. | 17 | 7 |
| 935 | 18.68 | radiation | 30 | 1440 | < th | dose independent | rect. | 17 | 15 |