BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0539600 Os05g0539600|AK066441
         (171 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0539600  Mitochondrial substrate carrier family protein      211   2e-55
Os05g0302700  Similar to ATP/ADP carrier protein                   79   1e-15
Os02g0718900  ADP,ATP carrier protein, mitochondrial precurs...    78   3e-15
AK108179                                                           74   4e-14
AK108903                                                           68   4e-12
Os11g0661300  Similar to ADP/ATP translocase-like protein          63   1e-10

>Os05g0539600 Mitochondrial substrate carrier family protein
          Length = 171

 Score =  211 bits (538), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 122/171 (71%), Positives = 122/171 (71%)

Query: 1   MSEEXXXXXXXXXXXXVEESLXXXXXXXXXXXXXXXXXXXXXXXVWEFERDLVAGAAMGG 60
           MSEE            VEESL                       VWEFERDLVAGAAMGG
Sbjct: 1   MSEEAAAAAAAAGAAGVEESLGRRRSRRGGGGDGVGMGAAAAARVWEFERDLVAGAAMGG 60

Query: 61  AVHTVVAPIERAKLLLQTQDGNXXXXXXXXXXXXXXDCVARTVRDEGVLSLWRGNGTAVI 120
           AVHTVVAPIERAKLLLQTQDGN              DCVARTVRDEGVLSLWRGNGTAVI
Sbjct: 61  AVHTVVAPIERAKLLLQTQDGNAALLGRARRFRGFADCVARTVRDEGVLSLWRGNGTAVI 120

Query: 121 RYYPSVALNFSLKVPTPTPKPPRHFCSYCLFVPCCPSYRFVRYNRINIASV 171
           RYYPSVALNFSLKVPTPTPKPPRHFCSYCLFVPCCPSYRFVRYNRINIASV
Sbjct: 121 RYYPSVALNFSLKVPTPTPKPPRHFCSYCLFVPCCPSYRFVRYNRINIASV 171



>Os05g0302700 Similar to ATP/ADP carrier protein
          Length = 380

 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 47/86 (54%)

Query: 48  FERDLVAGAAMGGAVHTVVAPIERAKLLLQTQDGNXXXXXXXXXXXXXXDCVARTVRDEG 107
           F  D + G        T  APIER KLL+Q QD                DC  RT++DEG
Sbjct: 80  FMIDFMMGGVSAAVSKTAAAPIERIKLLIQNQDEMIKSGRLSHPYKGIADCFGRTIKDEG 139

Query: 108 VLSLWRGNGTAVIRYYPSVALNFSLK 133
           V++LWRGN   VIRY+P+ ALNF+ K
Sbjct: 140 VIALWRGNTANVIRYFPTQALNFAFK 165



>Os02g0718900 ADP,ATP carrier protein, mitochondrial precursor (ADP/ATP
           translocase) (Adenine nucleotide translocator) (ANT)
          Length = 382

 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 45/87 (51%)

Query: 47  EFERDLVAGAAMGGAVHTVVAPIERAKLLLQTQDGNXXXXXXXXXXXXXXDCVARTVRDE 106
            F  D + G        T  APIER KLL+Q QD                DC  RT++DE
Sbjct: 81  NFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDE 140

Query: 107 GVLSLWRGNGTAVIRYYPSVALNFSLK 133
           G  SLWRGN   VIRY+P+ ALNF+ K
Sbjct: 141 GFASLWRGNTANVIRYFPTQALNFAFK 167



>AK108179 
          Length = 317

 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 45/86 (52%)

Query: 48  FERDLVAGAAMGGAVHTVVAPIERAKLLLQTQDGNXXXXXXXXXXXXXXDCVARTVRDEG 107
           F  D + G        T  APIER KLL+Q QD                DC  RT + EG
Sbjct: 17  FATDFLMGGVSAAVSKTAAAPIERIKLLIQNQDEMIKQGRLAAPYKGIGDCFVRTYQQEG 76

Query: 108 VLSLWRGNGTAVIRYYPSVALNFSLK 133
           ++SLWRGN   VIRY+P+ ALNF+ K
Sbjct: 77  MVSLWRGNTANVIRYFPTQALNFAFK 102



>AK108903 
          Length = 315

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 49  ERDLVAGAAMGGAV--HTVVAPIERAKLLLQTQDGNXXXXXXXXXXXXXXDCVARTVRDE 106
           E  L++GAA   AV   T  APIER KLL+Q Q                 DC A+T R E
Sbjct: 19  ENFLLSGAA---AVISKTAAAPIERVKLLVQNQGEMLKQGKISEPYKGVIDCTAKTFRSE 75

Query: 107 GVLSLWRGNGTAVIRYYPSVALNFSLK 133
           G  S WRGN T  IRY+P+ ALNF+ K
Sbjct: 76  GFYSFWRGNLTNCIRYFPTQALNFAFK 102



>Os11g0661300 Similar to ADP/ATP translocase-like protein
          Length = 329

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 38/70 (54%)

Query: 64  TVVAPIERAKLLLQTQDGNXXXXXXXXXXXXXXDCVARTVRDEGVLSLWRGNGTAVIRYY 123
           T  AP+ER KLLLQ Q                 D   R +R+EGV +LWRGN   VIRY+
Sbjct: 40  TGAAPVERVKLLLQNQAEMLRRGSLTRPYRGIADAFGRVLREEGVAALWRGNQANVIRYF 99

Query: 124 PSVALNFSLK 133
           P+ A NF+ K
Sbjct: 100 PTQAFNFAFK 109



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,641,549
Number of extensions: 174577
Number of successful extensions: 689
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 688
Number of HSP's successfully gapped: 6
Length of query: 171
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 77
Effective length of database: 12,127,685
Effective search space: 933831745
Effective search space used: 933831745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)