Os05g0302700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ATP/ADP carrier protein.
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Os05g0302700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ATP/ADP carrier protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.03 | 0.352 | 12.4 | 0.268 | 0.966 | 0.864 | 0.576 | -0.251 | -0.0835 | 17.4 | 20.6 | 1233 | -- | -- |
| 56.18 | 0.349 | 12.4 | 0.324 | 0.974 | 0.88 | 0.617 | -- | -0.0687 | 17.3 | 20.5 | 1232 | -- | -- |
| 56.85 | 0.351 | 12.4 | 0.257 | 0.969 | 0.862 | -- | -0.308 | -0.0845 | 17.4 | 20.58 | 1232 | -- | -- |
| 57.04 | 0.352 | 12.4 | 0.308 | 0.97 | 0.909 | -- | -- | -0.0752 | 17.4 | 20.53 | 1233 | -- | -- |
| 103.53 | 0.474 | 12.4 | 0.315 | -- | 0.77 | -- | -0.275 | -0.0818 | -- | 20.6 | 627 | -- | -- |
| 75.37 | 0.407 | 12.4 | 0.685 | 0.934 | -- | 0.774 | -- | 0.13 | 17.6 | -- | -- | -- | -- |
| 76.85 | 0.411 | 12.4 | 0.682 | 0.939 | -- | -- | -- | 0.133 | 17.6 | -- | -- | -- | -- |
| 66.29 | 0.379 | 12.4 | 0.478 | -- | 0.903 | -- | -- | -0.0764 | -- | 26.4 | 315 | -- | -- |
| 59.45 | 0.359 | 12.4 | -- | 0.994 | 0.939 | -- | -- | -0.109 | 17.4 | 20.5 | 1233 | -- | -- |
| 122.67 | 0.518 | 12.4 | 0.651 | -- | -- | -- | -- | 0.11 | -- | -- | -- | -- | -- |
| 89.09 | 0.442 | 12.4 | -- | 0.928 | -- | -- | -- | 0.0571 | 17.6 | -- | -- | -- | -- |
| 70.65 | 0.391 | 12.4 | -- | -- | 0.956 | -- | -- | -0.179 | -- | 26.46 | 323 | -- | -- |
| 133.86 | 0.54 | 12.4 | -- | -- | -- | -- | -- | 0.0381 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.76 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 2 | 54.86 | temperature | 15 | 90 | > th | dose dependent | sin | 0 | NA |
| 4 | 55.05 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 10 | 55.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 30 | 55.68 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 42 | 55.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 50 | 55.95 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 18 |
| 70 | 56.18 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 85 | 56.37 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 99 | 56.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 9 |
| 101 | 56.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 12 |
| 104 | 56.53 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 120 | 56.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 136 | 56.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 146 | 56.79 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 154 | 56.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 198 | 56.91 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 207 | 56.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 227 | 56.99 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 257 | 57.05 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 269 | 57.07 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 313 | 57.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 316 | 57.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 363 | 57.24 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 414 | 57.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 439 | 57.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 18 |
| 442 | 57.34 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 451 | 57.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 452 | 57.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 486 | 57.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 14 |
| 502 | 57.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 531 | 57.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 648 | 57.54 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 698 | 57.57 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 725 | 57.59 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 760 | 57.62 | temperature | 25 | 4320 | < th | dose dependent | rect. | 19 | 4 |
| 791 | 57.65 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 870 | 57.73 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 975 | 57.83 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |