BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0498400 Os05g0498400|AK058219
         (115 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0498400  Similar to Protein translation factor SUI1          238   1e-63
Os01g0794500  Eukaryotic translation initiation factor SUI1 ...   226   4e-60
Os07g0529800  Protein translation factor SUI1 homolog (GOS2 ...   216   2e-57
AK105037                                                          216   2e-57
Os04g0627900  Translation initiation factor SUI1 domain cont...   132   5e-32

>Os05g0498400 Similar to Protein translation factor SUI1
          Length = 115

 Score =  238 bits (606), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MSDLDVQLPSAFDPFAEANAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK 60
           MSDLDVQLPSAFDPFAEANAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK
Sbjct: 1   MSDLDVQLPSAFDPFAEANAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK 60

Query: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 115
           ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 115



>Os01g0794500 Eukaryotic translation initiation factor SUI1 family protein
          Length = 115

 Score =  226 bits (575), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 108/115 (93%), Positives = 111/115 (96%)

Query: 1   MSDLDVQLPSAFDPFAEANAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK 60
           MSDLDVQLPSAFDPFAEANAEDS  G G+KDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK
Sbjct: 1   MSDLDVQLPSAFDPFAEANAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK 60

Query: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 115
           ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGI KK++IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIVKKESIKIHGF 115



>Os07g0529800 Protein translation factor SUI1 homolog (GOS2 protein)
          Length = 115

 Score =  216 bits (551), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/115 (88%), Positives = 110/115 (95%)

Query: 1   MSDLDVQLPSAFDPFAEANAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK 60
           MSDLD+Q+P+AFDPFAEANA DSGA  G+KDYVHVRIQQRNGRKSLTTVQGLKKE+SYNK
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60

Query: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 115
           ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNV+ FLVQAGI KK++IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115



>AK105037 
          Length = 115

 Score =  216 bits (551), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/115 (88%), Positives = 110/115 (95%)

Query: 1   MSDLDVQLPSAFDPFAEANAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK 60
           MSDLD+Q+P+AFDPFAEANA DSGA  G+KDYVHVRIQQRNGRKSLTTVQGLKKE+SYNK
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60

Query: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 115
           ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNV+ FLVQAGI KK++IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115



>Os04g0627900 Translation initiation factor SUI1 domain containing protein
          Length = 244

 Score =  132 bits (333), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 73/84 (86%)

Query: 32  YVHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ 91
           YVHVR+QQRNGRK+LTTVQG+  EY+Y K+L+DLK+E CCNG VV+D ELG++IQLQGD 
Sbjct: 161 YVHVRVQQRNGRKTLTTVQGIGGEYNYAKVLRDLKRELCCNGNVVEDKELGKIIQLQGDH 220

Query: 92  RKNVATFLVQAGIAKKDNIKIHGF 115
           R +V+ FL +AG+ +KDNIK+HGF
Sbjct: 221 RNSVSDFLAKAGMVRKDNIKVHGF 244



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,854,060
Number of extensions: 139952
Number of successful extensions: 337
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 5
Length of query: 115
Length of database: 17,035,801
Length adjustment: 82
Effective length of query: 33
Effective length of database: 12,754,253
Effective search space: 420890349
Effective search space used: 420890349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)