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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0794500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Eukaryotic translation initiation factor SUI1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.0205) R2 : 0.303
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.679 (0.0537) R2dC : 0.246 R2C : 0.234
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.255 (0.0431) R2dN8 : 0.069 R2N8 : 0.0576
σ : 0.386
deviance : 68.2
__
_____
C
peak time of C : 6.31
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.82 0.348 14 -0.244 0.682 -0.488 0.53 1.76 0.0923 6.74 24.4 984 -- --
56.78 0.351 13.9 -0.0432 0.633 -0.813 0.461 -- 0.189 6.99 19.9 3834 -- --
55.43 0.347 14 -0.238 0.692 -0.469 -- 1.83 0.0934 6.68 24.3 913 -- --
57.18 0.352 13.9 -0.131 0.68 -0.889 -- -- 0.143 6.54 20.14 3786 -- --
79.58 0.415 14 -0.24 -- -0.456 -- 1.87 0.104 -- 24.68 1099 -- --
65.62 0.38 13.9 0.247 0.671 -- 0.616 -- 0.286 6.53 -- -- -- --
66.49 0.382 13.9 0.255 0.675 -- -- -- 0.283 6.33 -- -- -- --
79.04 0.414 13.9 -0.112 -- -1.08 -- -- 0.152 -- 19.7 2651 -- --
57.58 0.353 13.9 -- 0.674 -0.84 -- -- 0.164 6.47 19.97 3758 -- --
90.14 0.444 13.9 0.273 -- -- -- -- 0.298 -- -- -- -- --
68.2 0.386 13.9 -- 0.679 -- -- -- 0.255 6.31 -- -- -- --
79.27 0.415 13.9 -- -- -1 -- -- 0.172 -- 19.6 2631 -- --
92.1 0.448 13.9 -- -- -- -- -- 0.267 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.85 radiation 40 43200 < th dose dependent rect. 19 10
3 52.43 radiation 40 43200 < th dose dependent rect. 1 4
6 52.75 radiation 20 43200 < th dose independent rect. 19 11
12 53.09 radiation 1 720 < th dose dependent rect. 22 8
26 53.45 radiation 20 43200 < th dose independent rect. 1 5
35 53.56 radiation 1 14400 < th dose independent rect. 19 10
43 53.61 temperature 10 720 > th dose dependent rect. 3 4
49 53.71 temperature 10 720 > th dose dependent rect. 19 12
58 53.85 wind 9 43200 < th dose independent rect. 19 1
63 53.94 radiation 1 43200 < th dose independent rect. 1 4
93 54.17 radiation 1 14400 > th dose independent rect. 18 1
110 54.22 temperature 20 720 > th dose independent rect. 4 3
129 54.26 radiation 40 43200 < th dose independent rect. 7 1
138 54.31 humidity 50 43200 < th dose independent rect. 16 1
139 54.31 radiation 20 43200 < th dose dependent rect. 13 1
149 54.35 wind 1 43200 < th dose dependent rect. 11 1
151 54.36 temperature 20 43200 < th dose independent rect. 20 1
156 54.37 wind 3 43200 > th dose dependent rect. 15 1
157 54.38 wind 3 43200 > th dose independent rect. 13 1
165 54.41 wind 9 43200 > th dose dependent rect. 21 2
166 54.42 radiation 10 43200 < th dose independent rect. 18 3
170 54.43 humidity 70 43200 > th dose independent rect. 18 4
172 54.44 wind 5 43200 < th dose independent rect. 15 1
180 54.46 wind 5 43200 > th dose independent rect. 15 1
182 54.47 temperature 20 43200 > th dose independent rect. 20 1
186 54.47 humidity 50 43200 > th dose independent rect. 14 10
191 54.47 radiation 20 43200 > th dose dependent rect. 17 14
192 54.48 humidity 50 43200 > th dose independent rect. 14 1
193 54.48 radiation 1 43200 > th dose independent rect. 4 1
203 54.48 humidity 50 43200 > th dose independent rect. 14 8
209 54.48 radiation 1 43200 > th dose dependent rect. 4 1
210 54.48 radiation 20 43200 > th dose dependent rect. 6 1
235 54.50 wind 7 43200 < th dose independent rect. 22 1
240 54.51 radiation 1 43200 > th dose independent rect. 10 4
241 54.51 radiation 1 43200 < th dose independent rect. 10 4
242 54.51 radiation 40 43200 < th dose independent rect. 15 6
245 54.51 radiation 1 43200 < th dose dependent rect. 10 4
246 54.52 humidity 50 43200 > th dose independent rect. 16 1
249 54.53 wind 3 43200 < th dose independent rect. 13 1
266 54.55 wind 7 43200 > th dose independent rect. 22 1
274 54.55 wind 9 43200 > th dose dependent rect. 18 1
277 54.56 humidity 70 43200 > th dose independent rect. 10 1
286 54.56 temperature 20 720 > th dose dependent rect. 5 2
287 54.56 radiation 1 43200 < th dose dependent rect. 7 8
289 54.57 radiation 40 43200 < th dose independent rect. 15 2
296 54.58 humidity 70 43200 < th dose independent rect. 10 1
316 54.59 humidity 70 43200 < th dose independent rect. 17 7
334 54.61 wind 9 43200 > th dose independent rect. 19 1
337 54.61 wind 7 43200 < th dose independent rect. 21 3
354 54.62 humidity 60 43200 < th dose dependent rect. 13 1
355 54.62 radiation 1 43200 < th dose dependent rect. 12 1
356 54.63 atmosphere 1005 43200 < th dose independent rect. 9 2
360 54.63 wind 7 43200 < th dose dependent rect. 15 1
376 54.64 temperature 25 720 < th dose dependent rect. 19 15
377 54.65 radiation 1 43200 < th dose independent rect. 12 1
385 54.65 radiation 1 43200 < th dose dependent rect. 7 2
386 54.66 humidity 50 43200 > th dose independent sin 14 NA
389 54.66 radiation 20 43200 > th dose independent rect. 9 1
402 54.66 temperature 25 720 < th dose dependent rect. 21 12
429 54.68 humidity 80 43200 < th dose dependent rect. 18 3
434 54.69 humidity 50 43200 > th dose independent rect. 14 3
444 54.69 temperature 25 720 < th dose dependent sin 9 NA
453 54.70 humidity 70 43200 > th dose independent rect. 9 16
458 54.70 humidity 80 43200 < th dose dependent rect. 17 6
466 54.71 humidity 80 43200 < th dose dependent rect. 19 1
469 54.72 temperature 20 43200 > th dose independent rect. 7 1
504 54.74 temperature 20 43200 < th dose independent rect. 7 1
510 54.74 humidity 70 43200 > th dose independent rect. 14 10
522 54.75 humidity 70 43200 < th dose independent rect. 10 16
573 54.78 humidity 50 43200 < th dose independent rect. 14 8
588 54.78 wind 1 43200 < th dose dependent rect. 10 16
589 54.79 atmosphere 1005 43200 > th dose independent rect. 9 2
602 54.79 wind 3 43200 < th dose dependent rect. 20 5
613 54.80 wind 9 43200 > th dose dependent rect. 24 2
614 54.81 humidity 70 43200 > th dose independent sin 17 NA
616 54.81 radiation 1 43200 < th dose independent rect. 8 1
640 54.82 humidity 70 43200 > th dose independent rect. 14 22
650 54.83 humidity 70 43200 < th dose independent sin 17 NA
651 54.83 radiation 1 43200 > th dose independent rect. 8 1
661 54.83 humidity 70 43200 < th dose independent rect. 14 10
664 54.83 humidity 70 43200 > th dose independent rect. 16 20
692 54.84 humidity 60 43200 < th dose dependent rect. 12 13
700 54.85 humidity 50 43200 < th dose independent rect. 14 5
711 54.85 wind 3 43200 < th dose dependent rect. 20 2
716 54.85 humidity 60 43200 < th dose dependent rect. 12 10
749 54.86 temperature 25 720 < th dose dependent rect. 22 18
752 54.87 humidity 50 43200 < th dose independent rect. 14 1
759 54.87 wind 7 43200 > th dose independent rect. 21 5
769 54.87 humidity 70 43200 < th dose independent rect. 17 22
773 54.87 humidity 70 43200 > th dose independent rect. 16 23
787 54.88 humidity 50 43200 < th dose independent rect. 14 3
790 54.88 wind 7 43200 < th dose independent rect. 21 5
800 54.88 humidity 70 43200 < th dose independent rect. 14 22
805 54.88 radiation 1 43200 < th dose dependent rect. 14 1
813 54.89 atmosphere 1005 14400 > th dose independent rect. 16 1
814 54.89 radiation 1 43200 > th dose independent rect. 14 1
837 54.89 humidity 70 43200 < th dose independent rect. 17 19
852 54.90 wind 9 43200 < th dose independent rect. 24 1
888 54.91 humidity 70 43200 > th dose independent no NA NA
889 54.91 humidity 50 43200 < th dose independent sin 16 NA
919 54.91 humidity 70 43200 > th dose independent rect. 23 23
929 54.92 humidity 70 43200 < th dose independent no NA NA
930 54.92 humidity 90 43200 < th dose independent rect. 12 1
956 54.92 wind 7 43200 > th dose dependent rect. 21 5