BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0794500 Os01g0794500|J090066N21
         (115 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0794500  Eukaryotic translation initiation factor SUI1 ...   237   1e-63
Os05g0498400  Similar to Protein translation factor SUI1          226   4e-60
Os07g0529800  Protein translation factor SUI1 homolog (GOS2 ...   219   4e-58
AK105037                                                          219   4e-58
Os04g0627900  Translation initiation factor SUI1 domain cont...   130   2e-31

>Os01g0794500 Eukaryotic translation initiation factor SUI1 family protein
          Length = 115

 Score =  237 bits (604), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MSDLDVQLPSAFDPFAEANAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK 60
           MSDLDVQLPSAFDPFAEANAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK
Sbjct: 1   MSDLDVQLPSAFDPFAEANAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK 60

Query: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIVKKESIKIHGF 115
           ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIVKKESIKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIVKKESIKIHGF 115



>Os05g0498400 Similar to Protein translation factor SUI1
          Length = 115

 Score =  226 bits (575), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 108/115 (93%), Positives = 111/115 (96%)

Query: 1   MSDLDVQLPSAFDPFAEANAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK 60
           MSDLDVQLPSAFDPFAEANAEDS  G G+KDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK
Sbjct: 1   MSDLDVQLPSAFDPFAEANAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK 60

Query: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIVKKESIKIHGF 115
           ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGI KK++IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 115



>Os07g0529800 Protein translation factor SUI1 homolog (GOS2 protein)
          Length = 115

 Score =  219 bits (557), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/115 (90%), Positives = 109/115 (94%)

Query: 1   MSDLDVQLPSAFDPFAEANAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK 60
           MSDLD+Q+P+AFDPFAEANA DS   AGSKDYVHVRIQQRNGRKSLTTVQGLKKE+SYNK
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60

Query: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIVKKESIKIHGF 115
           ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNV+ FLVQAGIVKKE IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115



>AK105037 
          Length = 115

 Score =  219 bits (557), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/115 (90%), Positives = 109/115 (94%)

Query: 1   MSDLDVQLPSAFDPFAEANAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK 60
           MSDLD+Q+P+AFDPFAEANA DS   AGSKDYVHVRIQQRNGRKSLTTVQGLKKE+SYNK
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60

Query: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIVKKESIKIHGF 115
           ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNV+ FLVQAGIVKKE IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115



>Os04g0627900 Translation initiation factor SUI1 domain containing protein
          Length = 244

 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 74/84 (88%)

Query: 32  YVHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQ 91
           YVHVR+QQRNGRK+LTTVQG+  EY+Y K+L+DLK+E CCNG VV+D ELG++IQLQGD 
Sbjct: 161 YVHVRVQQRNGRKTLTTVQGIGGEYNYAKVLRDLKRELCCNGNVVEDKELGKIIQLQGDH 220

Query: 92  RKNVATFLVQAGIVKKESIKIHGF 115
           R +V+ FL +AG+V+K++IK+HGF
Sbjct: 221 RNSVSDFLAKAGMVRKDNIKVHGF 244



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,609,467
Number of extensions: 128292
Number of successful extensions: 283
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 5
Length of query: 115
Length of database: 17,035,801
Length adjustment: 82
Effective length of query: 33
Effective length of database: 12,754,253
Effective search space: 420890349
Effective search space used: 420890349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)