Os05g0498400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein translation factor SUI1.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0498400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Protein translation factor SUI1.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.18 | 0.396 | 15 | -0.247 | 0.579 | 1.55 | -0.602 | -5.34 | 0.00433 | 23.6 | 25.91 | 12 | -- | -- |
| 79.66 | 0.419 | 14.9 | 0.298 | 0.54 | 1.07 | -0.167 | -- | 0.129 | 23.3 | 25.62 | 12 | -- | -- |
| 72.56 | 0.397 | 15 | -0.16 | 0.572 | 1.52 | -- | -4.88 | 0.03 | 23.4 | 26.07 | 11 | -- | -- |
| 79.75 | 0.419 | 14.9 | 0.304 | 0.541 | 1.08 | -- | -- | 0.132 | 23.3 | 25.7 | 12 | -- | -- |
| 88.77 | 0.439 | 15 | -0.00899 | -- | 1.2 | -- | -4.48 | 0.101 | -- | 26.76 | 23 | -- | -- |
| 97.22 | 0.462 | 14.9 | 0.456 | 0.439 | -- | -0.128 | -- | 0.187 | 20.3 | -- | -- | -- | -- |
| 97.27 | 0.462 | 14.9 | 0.46 | 0.44 | -- | -- | -- | 0.187 | 20.2 | -- | -- | -- | -- |
| 93.86 | 0.451 | 14.9 | 0.346 | -- | 0.719 | -- | -- | 0.155 | -- | 25.51 | 233 | -- | -- |
| 82.11 | 0.424 | 14.9 | -- | 0.56 | 1.15 | -- | -- | 0.0956 | 23.4 | 25.7 | 12 | -- | -- |
| 107.96 | 0.486 | 14.9 | 0.457 | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
| 102.85 | 0.474 | 14.9 | -- | 0.437 | -- | -- | -- | 0.136 | 20.3 | -- | -- | -- | -- |
| 89.17 | 0.44 | 14.9 | -- | -- | 1.19 | -- | -- | -0.0147 | -- | 13.27 | 673 | -- | -- |
| 113.46 | 0.497 | 14.9 | -- | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.78 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 3 | 62.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 33 | 65.45 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 37 | 65.52 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 49 | 66.34 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 11 |
| 50 | 66.41 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 65 | 66.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 89 | 67.20 | temperature | 25 | 30 | > th | dose dependent | rect. | 20 | 22 |
| 158 | 68.46 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 9 |
| 200 | 69.15 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 291 | 70.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 388 | 71.00 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 412 | 71.18 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 532 | 71.85 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 16 |
| 538 | 71.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 559 | 72.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 19 |
| 705 | 72.64 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 758 | 72.82 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 834 | 73.10 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 835 | 73.10 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 840 | 73.11 | temperature | 10 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 989 | 73.64 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 992 | 73.65 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |